Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00048 | ATGCACAAGGCAATCACCGCCCAACAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGCCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCGAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACGGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTGGTTCCGCAGTCCGGCAACATGTACTCTCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGTCCATGTTTCAGTCTTTCGGATCTGGTCATATCAGTCAGATGACTCCAATACAAAATCATAGAAATAATATGTCGAATGATAAAACGAACGTACCAGACTACTCTGCTTACACTCCTTGCGAAGGATATCACTTGGTCGAGTGA | 630 | 43.02 | MHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPETFQTYEHLVPQSGNMYSQRTDLSTEILSFDAQSNKGESMFQSFGSGHISQMTPIQNHRNNMSNDKTNVPDYSAYTPCEGYHLVE | 209 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 304920 | 306466 | - | MELO3C017032.2.1 | Cme07g00048 | 332064 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00048 | 209 | SUPERFAMILY | Homeodomain-like | 35 | 98 | IPR009057 | - | |
| Cme07g00048 | 209 | MobiDBLite | consensus disorder prediction | 111 | 125 | - | - | |
| Cme07g00048 | 209 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 1 | 194 | IPR044559 | GO:0003700 | |
| Cme07g00048 | 209 | MobiDBLite | consensus disorder prediction | 94 | 125 | - | - | |
| Cme07g00048 | 209 | CDD | homeodomain | 36 | 98 | IPR001356 | GO:0003677 | |
| Cme07g00048 | 209 | ProSiteProfiles | 'Homeobox' domain profile. | 32 | 97 | IPR001356 | GO:0003677 | |
| Cme07g00048 | 209 | SMART | HOX_1 | 34 | 101 | IPR001356 | GO:0003677 | |
| Cme07g00048 | 209 | Pfam | Homeodomain | 36 | 96 | IPR001356 | GO:0003677 | |
| Cme07g00048 | 209 | Gene3D | - | 37 | 102 | - | - | |
| Cme07g00048 | 209 | PANTHER | - | 1 | 194 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g02340 | Cme-Chr6:30764996 | Cme07g00048 | Cme-Chr7:304920 | 1.23E-76 | dispersed | |
| Cme07g00048 | Cme-Chr7:304920 | Cme08g00256 | Cme-Chr8:1665495 | 2.40E-15 | dispersed | |
| Cme07g00048 | Cme-Chr7:304920 | Cme12g01833 | Cme-Chr12:24715249 | 2.82E-14 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41586 | PF00046 | Homeodomain | 5.30E-18 | CL0123 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00048 | - | - | cmo:103493822 | 430.639 |