Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00050 ATGGGCGAGGTTTCTAAATCCACCATGAAGAAGAAGAAGAAAAAGGGTCGCCCTTCTCTTTTAGATCTCCAAAAGCGCTTCCTCAAACAGCAAAAGTTGCAGGAACAGCATCAAGAACCCCTTAACGCTTTCCACTTTCCCTCCAACCCTAAGAACCCACCTTCTTGTCGGAATCCCAATGTTCACCCCGCAACAGAGCAAGTCCCCATCACCGCTGCCGCCGTCGCCGACGACGACGACGAGCGCATTGAGAAGAAGCATAAGCCCTTACTCGGTTTAACTTCTCGTCAAAACTGTCCAACATTGTCCGGTTATTCTTTGCGTAAATCGGCCTCCTACGGCGAAGAGTCGGAGACGGCCCTCAAGCGTCGCAGAACCGGTGCCGCCCAGTTTGGATCTTCTCAAGTGAGAGAAGATAAAGCTTTGAAAGCGACAGACACTGCACATGGGTCGCAGGTGGAGTCTGGTCCCACGACAACTTTGCCAGACAAAAAGTTGTTGATTTTCATCCTTGATAGGCTTCAAAAAAAAGACACCCATGGAGTATTTTCCGAACCCGTGGATCCAAACGATCTTCCCGATTACCATGTCATTATTCAAAATCCTATGGATTTTGGGACTGTGAGAACGAAATTAGATGGAGGAGCTTACGCAAATTTGGAACAGTTTGAAGAAGACATTTTTTTGATATGTTCGAATGCAATGAAGTATAATGCTTCTGATACTGTTTTCTTCCGTCAGGCACGATCGATACAAGAACTTGCAAAGAAGGATTTTGAGAATTTGAGGCGAGAGAGCAGTGATGAAAGTGAACCAGAACAGAAAGTTGTGAGGAGAGGTAGGCCTCCAGGAAAGAGCCTGAAGAAATCATTAGGTCTCTGTAACCCTATTGAAAGTAATGGAGCAGAGTTCTGCTCAGGTGCTACTCTTGCTTCTGGATGTGATGATTCCTACAATGTCAATGGTTACAGTTTGAGAAGAGCACGTTCCACCTTCAGGCCCCTGCCTGCAGATCCTCTAGCAAGAACATCATCTGCAGCACAAACTCAACATGGCGAAACTTTGGCCAGCTGGTTGCCTGAATGGAAAAATGAGTTTCCAGCTTCAGTTTTAAAGGGTGTTCTTAAAAGTGGAAAGAATGATAATATGGCTGTGAATGAGAATAGACGTGATACCTATAATCGTTCCATGTCATGTGGGAATTGGCCATCTGTCTTTGGTGACCTTGATGGAGACTTGAAGCAACTAATTACTGTGGGTTTGCATGCCGAGCATGGTTATGCAAGAAGCTTAGCTCTCTTTGCAGCCGATCTTGGTCCTGCAGTTTGGAATATTGCTTTAAAGAAAATTGAAAGTATTAGTCGGGAGCTGGGGCGAGTATTAATACATGAAATTGAAATGCTACAGCAGCATCGTTTGTTGCCTCTGGATGGAGGCTCATCCGACATGAAAACAGTGGCAAAGAGCACGGCTGTTCTTCCATGTAGAAGCATATCTGGCTCTAACATTGGTGTTTCAAATAATTTTTTGAAACTTGGCGAAGATGCTGGTGATGAAATTGATAGAGTGAGAAATCCTGAAAGCGAGACAGTGTTGCTAGACAGAAGTAGAGGTGTAACAGGATCAACAACTTGTATACCGAATGAACAGAACGTAGTAGTTCCTTCAAACATCCACACCACAAATGGTAATCTTTTCCCCCATTTTTTACAAGAAATGAGAATGGTAAGACTTGATTCTATTCTTGGTGGGACGTCTTATTCAGACTACTCTACATGCCCATCTCTCAACAATGCTTCTTTCCAAATCCCTTCCAGTTCAGATAATACGGATTTGTTAAGCCAAGCTGGAATGCCAAAACTTGCAGAAGAAGTTGCCTCTCAGTCACACGCTCTGTTGCATTCACCAGCCCGTGTCTACATTCAGGACTCAGTCGATGCGCAACAAGACAAGCGTAGTGAAAAGGCACATTGGCAAGAATTATCAACACGTCCTGTGCTAGATTCAATCACCTTCAATACCGACCTTAATTTTGGATTAGGCTTATCTGCTGCACCCAGTTCTAATCTGCAGATTCTTTCTCAAATTCAACCCGATTTAGTATTGCAGCTGTGA 2115 44.26 MGEVSKSTMKKKKKKGRPSLLDLQKRFLKQQKLQEQHQEPLNAFHFPSNPKNPPSCRNPNVHPATEQVPITAAAVADDDDERIEKKHKPLLGLTSRQNCPTLSGYSLRKSASYGEESETALKRRRTGAAQFGSSQVREDKALKATDTAHGSQVESGPTTTLPDKKLLIFILDRLQKKDTHGVFSEPVDPNDLPDYHVIIQNPMDFGTVRTKLDGGAYANLEQFEEDIFLICSNAMKYNASDTVFFRQARSIQELAKKDFENLRRESSDESEPEQKVVRRGRPPGKSLKKSLGLCNPIESNGAEFCSGATLASGCDDSYNVNGYSLRRARSTFRPLPADPLARTSSAAQTQHGETLASWLPEWKNEFPASVLKGVLKSGKNDNMAVNENRRDTYNRSMSCGNWPSVFGDLDGDLKQLITVGLHAEHGYARSLALFAADLGPAVWNIALKKIESISRELGRVLIHEIEMLQQHRLLPLDGGSSDMKTVAKSTAVLPCRSISGSNIGVSNNFLKLGEDAGDEIDRVRNPESETVLLDRSRGVTGSTTCIPNEQNVVVPSNIHTTNGNLFPHFLQEMRMVRLDSILGGTSYSDYSTCPSLNNASFQIPSSSDNTDLLSQAGMPKLAEEVASQSHALLHSPARVYIQDSVDAQQDKRSEKAHWQELSTRPVLDSITFNTDLNFGLGLSAAPSSNLQILSQIQPDLVLQL 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 309866 313986 + MELO3C017030.2.1 Cme07g00050 332066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00050 704 Gene3D - 159 281 IPR036427 GO:0005515
Cme07g00050 704 MobiDBLite consensus disorder prediction 261 289 - -
Cme07g00050 704 MobiDBLite consensus disorder prediction 34 51 - -
Cme07g00050 704 ProSitePatterns Bromodomain signature. 180 237 IPR018359 -
Cme07g00050 704 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 8 452 - -
Cme07g00050 704 MobiDBLite consensus disorder prediction 1 65 - -
Cme07g00050 704 PANTHER BROMODOMAIN CONTAINING PROTEIN 8 452 - -
Cme07g00050 704 SMART bromo_6 156 264 IPR001487 GO:0005515
Cme07g00050 704 CDD Bromodomain 163 259 - -
Cme07g00050 704 SUPERFAMILY Bromodomain 155 265 IPR036427 GO:0005515
Cme07g00050 704 Pfam Bromodomain 170 249 IPR001487 GO:0005515
Cme07g00050 704 PRINTS Bromodomain signature 192 208 IPR001487 GO:0005515
Cme07g00050 704 PRINTS Bromodomain signature 208 226 IPR001487 GO:0005515
Cme07g00050 704 PRINTS Bromodomain signature 226 245 IPR001487 GO:0005515
Cme07g00050 704 ProSiteProfiles Bromodomain profile. 175 245 IPR001487 GO:0005515
Cme07g00050 704 MobiDBLite consensus disorder prediction 261 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00050 K22184 BRD9; bromodomain-containing protein 9 - csv:101217603 1212.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01147 Cme-Chr1:14755047 Cme07g00050 Cme-Chr7:309866 2.87E-96 dispersed
Cme07g00050 Cme-Chr7:309866 Cme08g00186 Cme-Chr8:1271470 1.34E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00050 Cme_Chr07 FPKM 1.474537 1.910632 0.454137 0.099799 0.537323 0.0 0.0 0.0 0.0 0.0