Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00052 ATGAGCTGTTTTTCTTGCATTCGTACTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAACGGGAGTGGGAGGGGGAAGTCATATTCAAATGAAACTGGAAAAGGGAAGGAATCACAAAACAGAGGTGGAAACAACCGGAAATGTGGAGCTGCGCGAAGCTTCCCGTTTCGCGAATTGGCGACTGCCACAAGAGGTTTCAAAGAAGTGAACTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTACAAAGGCCGATTAGAATCAGGCCAGATTGTTGCAATCAAACAACTCAATCATGATGGTCTTCAAGGATATCAGGAATTCATCGTTGAAGTTCTCATGTTAAGTTTATTGCATCACAGTAATCTTGTCACATTGATTGGCTATTGTACTGATGGAGATCAAAGGCTGTTGGTCTATGAGTACATGTCGATGGGAAGCTTGGAAAATCATCTTTTTGGTTTGTTCCCCAAACGATCGCCATTGAGTTGGAACACTCGAATCAAGATTGCACTTGGTGCTGCACAGGGCCTCGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATTTACCGTGACTTGAAATCTGCAAATATTTTACTGGACGATGATTTCAATCCAAAGCTCTCCGATTTTGGACTGGCCAAGTTAGGACCAGTTGGCGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGGAAACTGACCCTTAAATCTGATATCTATTGCTTTGGTGTAGTTCTCTTGGAGATAATTACAGGTAGAAAAGCTATAGACACCACCAAGAAACCTGGAGAGCAAAATCTTGTTGCTTGGTCTCGCCCTTTTTTAAAAGACCGGAGGAAGTTTGTTCAATTAGTCGACCCACTGCTGGAAGGGCGCTATCCACTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTGCAGGAGCAGCCAATGTTCCGTCCAATTATCAGTGATATTGTTGTAGCCCTTGAATATTTAGCTTCTCAGAGTCACGCATCAGAACAACCAAGGGACGGGGTACGTAGTCCGTCCAAACTATCTCCTCAAGGGGACAGTAGTGCCCATGTTCAAGATTCAAGATGCGGAAAGAGTTCAACATCCAAGTAA 1158 44.65 MSCFSCIRTRCKDASKVEIDNGSGRGKSYSNETGKGKESQNRGGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLESGQIVAIKQLNHDGLQGYQEFIVEVLMLSLLHHSNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLFPKRSPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDTTKKPGEQNLVAWSRPFLKDRRKFVQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPMFRPIISDIVVALEYLASQSHASEQPRDGVRSPSKLSPQGDSSAHVQDSRCGKSSTSK 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 319325 322201 + MELO3C017028.2.1 Cme07g00052 332068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00052 385 SMART serkin_6 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00052 385 MobiDBLite consensus disorder prediction 24 47 - -
Cme07g00052 385 PANTHER OS07G0668900 PROTEIN 23 371 - -
Cme07g00052 385 SUPERFAMILY Protein kinase-like (PK-like) 50 341 IPR011009 -
Cme07g00052 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cme07g00052 385 Gene3D Phosphorylase Kinase; domain 1 37 142 - -
Cme07g00052 385 MobiDBLite consensus disorder prediction 22 50 - -
Cme07g00052 385 Pfam Protein kinase domain 67 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00052 385 CDD STKc_IRAK 73 341 - -
Cme07g00052 385 ProSiteProfiles Protein kinase domain profile. 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00052 385 PANTHER OS07G0668900 PROTEIN 23 371 - -
Cme07g00052 385 MobiDBLite consensus disorder prediction 348 385 - -
Cme07g00052 385 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Cme07g00052 385 Gene3D Transferase(Phosphotransferase) domain 1 143 360 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01340 Cme07g00052 CCT
Cme03g01340 Cme07g00052 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01794 Cme-Chr4:25628060 Cme07g00052 Cme-Chr7:319325 3.20E-84 dispersed
Cme07g00052 Cme-Chr7:319325 Cme10g00828 Cme-Chr10:5472250 2.35E-164 dispersed
Cme08g02316 Cme-Chr8:30118724 Cme07g00052 Cme-Chr7:319325 7.43E-55 transposed
Cme03g01340 Cme-Chr3:22943619 Cme07g00052 Cme-Chr7:319325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64989 PF00069 Pkinase 2.20E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00052 - - csv:101203407 775.393