Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00071 ATGGCGGAGTACGGCGGTGAGAATGTCGAAGTGGATCCAAGAAGCGGTTTCTGTAAGTCCACAAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACGAATCCCTCGATGCCACGACGTTTATCTCTTCCCGTCCTCATAACGGCAAAATCGCCCTGATCGACGCCGCCACCGGCCACCACATAACCTACTCCGATCTCTGGAACGCCGTCCACTCCGTCGCCTCTTCCCTTTCCGACATGGGCATCAGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAATTCTATCCACTTCCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCATCATCACCACCACAAATCCCCTCAATACTCCCCAAGAAATCGCCAAGCAAATAGCCGATTCCAGACCGATTTTAGCCTTCACCACCCAAGAATTAATACCCAAAATCTCTACTTCCAAATTACCAATCGTCATAATCGACGGTCAAATTCCGAAATCCCAAGACAAAATCGTGACGACGTTGAGCGAAATGATGAAGAAAAAAGCAAGTGGGAGTCAAATCAAGGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCCTCTGGAACGACAGGGGCGAGCAAAGGCGTGGTGTCGTCTCACAAGAATCTAATCGCCATGGTTCAAGTGGTGGTAACGAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATCTGTACAGTCCCAATGTTTCATATTTACGGCCTTGTGGCGTTCGCTACGGGGCTGCTTTCCTCAGGATCGACTATCGTTGTATTGTCGAAATTCGAGATTCATGAAATGTTGTCAGCGATTGAGAAGTACAAGGCTACGTACTTGCCTCTCGTGCCACCGATTTTGGTGGCGCTGGTGAACGCTGCCGAGCAAATAAAAGGAAAGTACGATTTGGGGTCATTGCACACGGCGCTTTCCGGCGGAGCGCCGCTGGGGAAGGAGGTGATTGAGGGTTTTGTTGAGAAATTTCCGCATGTTGCGATTCTTCAGGGTTATGGATTGACAGAGTCCACCGGAATTGGGGCGTCTACCGATTCTTTGGAGGAGAGTCGCCGGTACGGCACGGCGGGGCTTCTGTCGCCGAGTACTGAAGGGATGATTGTTGACCCGGAAACCGGTGAGGCTCTTCCTGTGAACCGGACCGGAGAACTTTGGCTTAGAGGCCCCACCGTGATGAAAGGGTATTTTGGTAATGTGGAGGCAACAAATTCAACCCTTGACTCGGAGGGATGGTTGAGAACTGGTGATCTGTGTTACATCGACGAAGATGGTTTTATTTTTGTAGTTGATAGGCTTAAGGAACTCATCAAATATAAGGGTTATCAGGTGCCACCGGCAGAATTAGAGGCCTTGTTGCTAACTCATCCCAACATCTCTGACGCAGCCGTGATTCCATATCCAGACAAGGATGTTGGACAGTTTCCTATGGCTTATGTGGTAAGAAAGGCCGGAAGTGACCTTTCACACGACGATATCATGCAATTTGTAGCAAAACAGGTGGCACCGTACAAGAGGATTCGACGGGTGGCGTTCGTGGATTCCATTCCCAAGAATCCGTCCGGTAAAATTTTGAGGAAGGATCTTATAAAGCTTGCAACCTCCAAACTCTAA 1653 49.73 MAEYGGENVEVDPRSGFCKSTKIFHSKRRPIPLPPNESLDATTFISSRPHNGKIALIDAATGHHITYSDLWNAVHSVASSLSDMGIRKGHVILLLSPNSIHFPIICLAVMSIGAIITTTNPLNTPQEIAKQIADSRPILAFTTQELIPKISTSKLPIVIIDGQIPKSQDKIVTTLSEMMKKKASGSQIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYKATYLPLVPPILVALVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKFPHVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNVEATNSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPYPDKDVGQFPMAYVVRKAGSDLSHDDIMQFVAKQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATSKL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 444827 447870 + MELO3C017009.2.1 Cme07g00071 332087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00071 550 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Cme07g00071 550 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cme07g00071 550 PANTHER 4-COUMARATE--COA LIGASE-LIKE 3-RELATED 11 549 - -
Cme07g00071 550 CDD 4CL 33 542 - -
Cme07g00071 550 Gene3D - 448 549 IPR045851 -
Cme07g00071 550 Gene3D - 21 447 IPR042099 -
Cme07g00071 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 549 - -
Cme07g00071 550 SUPERFAMILY Acetyl-CoA synthetase-like 48 547 - -
Cme07g00071 550 Pfam AMP-binding enzyme 50 452 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01469 Cme-Chr4:20987851 Cme07g00071 Cme-Chr7:444827 5.58E-111 dispersed
Cme04g02507 Cme-Chr4:31408827 Cme07g00071 Cme-Chr7:444827 1.40E-151 dispersed
Cme07g00071 Cme-Chr7:444827 Cme12g01605 Cme-Chr12:23303176 5.33E-159 dispersed
Cme09g01750 Cme-Chr9:22002747 Cme07g00071 Cme-Chr7:444827 2.11E-58 dispersed
Cme07g00071 Cme-Chr7:444827 Cme12g00392 Cme-Chr12:5642969 6.88E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00071 K10526 - csv:101221396 1041.57