Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00078 ATGGCCAACGAACAGGACGAAGTTCAAGCTAATCCTGAGGCTACACCGCTGGCACTTACTTCCGTCACTCAAGAGGCCATTTCTCCCGGTGACAAACTGCAGTTTCCTTCTTACGCCGCAAAAGACCTGTTGTCGATTGGAGTATGCATTCCCTGCATCATTCGCCTATCTGGCATTGAAAGGCACAATTATTCCTTTTCATTGTCAGCACCAATCTTAGGTTCTGATACGGAGGCAATTGAGGATGATAATGATAGAAATACTTGCTGCTTATGTTTAGGTATTTTACAGTTCAGTTACATTGACGATAAAGGTGACTTTATAAAATGTAAAGGAGTTGATGATTTAGCTGTCTCGATTTCTGAGATGGTAAAGAAAGAGGGCCATCAGATTGATAGCTTTTCTCTTGAGGTGTCGGTTCCTTCAATCATTCTGGAGAATGAGAAGCGTGTTTGGCTGTATTTGAAAAGAAAATATGGGTCTGAACAGTGGTTTCAAGGCAAGCCTCCTCCTATATGTCTTTCAGCGAAGGATGCCTTAAAAATCTGTATAACAAAGCCTCTTGAAACTTTACTGGATTGCAAATCTAGTTCAAGTGGCTTGCGCATCCGGTTAACTTATAGTCATCCTAAAGCTTCAAATGGCAATGGTAATTCCATCAAAAGAAACCAGGATGGCTTCAAGATGAGAAAAATCATTGGCAGTGATGAACCCTCGGATATTTCAAACTGTAATGTCAATTCTGTTGCTGATGATTGTATCAACCCTTCACAAGAAGTTATTTTTCCTCAAGAAACGTATTCAAGAAATGTGAGTCAGACACGTTGGGTAATTGGTGAAGAGAGAATGGGAGAAGCATCTGTCGAGGAGATTCTAGGCAACAATATTCTTCCCTTCTGTCGAGGTGATAGTTACAAGTTCCATGCTGCCGGTAGAGAGGATCTCGATGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAAATACAGAACGCACGTCTTCTCCCATCTGAGATGATAATAAATGAAATACAGTCAAAGATAAATAGTCCAGAAACTAAATTGGTTGGCGTAAGAAATCTGAAAGTTGTAGGCAGCGAAGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAGAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCGCCGAAGTCCATTAGAACGTGAAAAGATCATCCACTGGATGAAGATTGAGAAGGTTGCTAAAAGTTCTCAGTACTATCTCCTACATTTGTGTACTCAGGCTGGAACATACATTAAAGAATTCGTCCATGGGGATCTTGGTCGGACTCATCCCAGTATAGGATCTATTCTTAGTTGCCGAGCTGAGATTCTTCAACTTGACGTTACGGATATAAAAATGGACTGCCATTTGGCCGAATAA 1419 41.3 MANEQDEVQANPEATPLALTSVTQEAISPGDKLQFPSYAAKDLLSIGVCIPCIIRLSGIERHNYSFSLSAPILGSDTEAIEDDNDRNTCCLCLGILQFSYIDDKGDFIKCKGVDDLAVSISEMVKKEGHQIDSFSLEVSVPSIILENEKRVWLYLKRKYGSEQWFQGKPPPICLSAKDALKICITKPLETLLDCKSSSSGLRIRLTYSHPKASNGNGNSIKRNQDGFKMRKIIGSDEPSDISNCNVNSVADDCINPSQEVIFPQETYSRNVSQTRWVIGEERMGEASVEEILGNNILPFCRGDSYKFHAAGREDLDVRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEGEAEKQKILQRTPIRVLHRRSPLEREKIIHWMKIEKVAKSSQYYLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILSCRAEILQLDVTDIKMDCHLAE 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 474376 480320 + MELO3C017004.2.1 Cme07g00078 332094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00078 472 SUPERFAMILY Pseudouridine synthase 379 464 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cme07g00078 472 PANTHER UNCHARACTERIZED 382 467 IPR039894 -
Cme07g00078 472 PANTHER BNAC07G15400D PROTEIN 38 382 - -
Cme07g00078 472 PANTHER UNCHARACTERIZED 38 382 IPR039894 -
Cme07g00078 472 PANTHER BNAC07G15400D PROTEIN 382 467 - -
Cme07g00078 472 Gene3D - 364 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00078 K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] - csv:101215464 886.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00078 Cme-Chr7:474376 Cme12g00799 Cme-Chr12:14489030 5.20E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g140 . . . . Bpe02g00327 . . Bma01g02392 . . . . Car01g01567 . . Cpe06g00039 . . . . . . . . . . . . . . . . . . . Lsi04g01789 Csa04g02680 . . . . Bda11g00954 . . . . . Sed13g2172 . . . . . Car09g00063 . Cpe02g00050 Bhi09g02936 Tan01g5070 Cmetu07g2209 . Hepe01g2317 Mch11g0076 . Cla05g01583 Cam05g1691 Cec05g1694 Cco05g1741 Clacu05g1680 Cmu05g1571 Cre05g1688 . . Chy07g00371 Cme07g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008871 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 2 3 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00078 Cme_Chr07 FPKM 11.728903 13.313127 21.7556 20.131662 73.902031 66.652542 76.420959 30.883518 30.084913 28.655087