Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00083 TGCCCAAATTCCTCTCAGAAAAAGCCAATTCTGCACAACAGTTGCCTTTCACGCTTCCAACCATCTTCTTTAATTCCAGCTTCCTCCCTTCTCTCTCTCTTCTTTCAATTTAATTACTTTATCTTGGAAATCATATGTTCTTTAATACCATCATTACTTTTTCTCTTTCCTTTCTTCTTCACTCACTTTCTCTCACTCTCCTTCTTCCTTCCTTATTTTCTCTGTTCTTTTTTTTTTTTTTTTCCAGCCATGTCACCGCCGGCCAGAACCAAAACATGGAACGGCGGCCTCGATAAGCATTATCCACCCCCACTTGCTACACACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTGTATTCGGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAGGGCCCCATTTGTGTCCCTCAAGCACCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGCCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGAGCAGCCACCTCCATCGGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGCGGGAGACATCGACATTCGGGTCGACGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAATCATCCGAAACCGAATAGAAGTGGGTATAATTTCTTCTTTGCCGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATCGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTACAAGGAGAAAATGAGGATGGGAACAGATGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG 1224 42.4 CPNSSQKKPILHNSCLSRFQPSSLIPASSLLSLFFQFNYFILEIICSLIPSLLFLFPFFFTHFLSLSFFLPYFLCSFFFFFPAMSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRMGTDVDGANYSKHGD 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 521716 524027 + MELO3C016999.2.1 Cme07g00083 332099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00083 407 Pfam HMG (high mobility group) box 321 388 IPR009071 -
Cme07g00083 407 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 98 395 - -
Cme07g00083 407 SMART ARID_2 109 199 - -
Cme07g00083 407 Pfam ARID/BRIGHT DNA binding domain 118 199 IPR001606 GO:0003677
Cme07g00083 407 ProSiteProfiles ARID domain profile. 112 203 IPR001606 GO:0003677
Cme07g00083 407 SUPERFAMILY ARID-like 109 211 IPR036431 GO:0003677
Cme07g00083 407 SMART hmgende2 320 389 IPR009071 -
Cme07g00083 407 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 98 395 - -
Cme07g00083 407 Coils Coil 377 397 - -
Cme07g00083 407 SMART bright_3 113 204 IPR001606 GO:0003677
Cme07g00083 407 MobiDBLite consensus disorder prediction 301 318 - -
Cme07g00083 407 Gene3D - 109 209 IPR036431 GO:0003677
Cme07g00083 407 CDD ARID_HMGB9-like 114 199 IPR045303 GO:0003677
Cme07g00083 407 MobiDBLite consensus disorder prediction 296 327 - -
Cme07g00083 407 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 321 388 IPR009071 -
Cme07g00083 407 SUPERFAMILY HMG-box 318 391 IPR036910 -
Cme07g00083 407 CDD HMGB-UBF_HMG-box 321 385 - -
Cme07g00083 407 Gene3D High mobility group box domain 305 398 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00713 Cme-Chr5:8358680 Cme07g00083 Cme-Chr7:521716 2.61E-62 dispersed
Cme06g02319 Cme-Chr6:30610995 Cme07g00083 Cme-Chr7:521716 2.39E-07 dispersed
Cme07g00083 Cme-Chr7:521716 Cme09g01757 Cme-Chr9:22043311 2.29E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41589 PF01388 ARID 4.50E-18 CL0123 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00083 - - csv:101219101 640.958