Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00083 TGCCCAAATTCCTCTCAGAAAAAGCCAATTCTGCACAACAGTTGCCTTTCACGCTTCCAACCATCTTCTTTAATTCCAGCTTCCTCCCTTCTCTCTCTCTTCTTTCAATTTAATTACTTTATCTTGGAAATCATATGTTCTTTAATACCATCATTACTTTTTCTCTTTCCTTTCTTCTTCACTCACTTTCTCTCACTCTCCTTCTTCCTTCCTTATTTTCTCTGTTCTTTTTTTTTTTTTTTTCCAGCCATGTCACCGCCGGCCAGAACCAAAACATGGAACGGCGGCCTCGATAAGCATTATCCACCCCCACTTGCTACACACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTGTATTCGGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAGGGCCCCATTTGTGTCCCTCAAGCACCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGCCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGAGCAGCCACCTCCATCGGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGCGGGAGACATCGACATTCGGGTCGACGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAATCATCCGAAACCGAATAGAAGTGGGTATAATTTCTTCTTTGCCGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATCGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTACAAGGAGAAAATGAGGATGGGAACAGATGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG 1224 42.4 CPNSSQKKPILHNSCLSRFQPSSLIPASSLLSLFFQFNYFILEIICSLIPSLLFLFPFFFTHFLSLSFFLPYFLCSFFFFFPAMSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRMGTDVDGANYSKHGD 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 521716 524027 + MELO3C016999.2.1 Cme07g00083 332099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00083 407 Pfam HMG (high mobility group) box 321 388 IPR009071 -
Cme07g00083 407 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 98 395 - -
Cme07g00083 407 SMART ARID_2 109 199 - -
Cme07g00083 407 Pfam ARID/BRIGHT DNA binding domain 118 199 IPR001606 GO:0003677
Cme07g00083 407 ProSiteProfiles ARID domain profile. 112 203 IPR001606 GO:0003677
Cme07g00083 407 SUPERFAMILY ARID-like 109 211 IPR036431 GO:0003677
Cme07g00083 407 SMART hmgende2 320 389 IPR009071 -
Cme07g00083 407 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 98 395 - -
Cme07g00083 407 Coils Coil 377 397 - -
Cme07g00083 407 SMART bright_3 113 204 IPR001606 GO:0003677
Cme07g00083 407 MobiDBLite consensus disorder prediction 301 318 - -
Cme07g00083 407 Gene3D - 109 209 IPR036431 GO:0003677
Cme07g00083 407 CDD ARID_HMGB9-like 114 199 IPR045303 GO:0003677
Cme07g00083 407 MobiDBLite consensus disorder prediction 296 327 - -
Cme07g00083 407 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 321 388 IPR009071 -
Cme07g00083 407 SUPERFAMILY HMG-box 318 391 IPR036910 -
Cme07g00083 407 CDD HMGB-UBF_HMG-box 321 385 - -
Cme07g00083 407 Gene3D High mobility group box domain 305 398 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00083 - - - csv:101219101 640.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00713 Cme-Chr5:8358680 Cme07g00083 Cme-Chr7:521716 2.61E-62 dispersed
Cme06g02319 Cme-Chr6:30610995 Cme07g00083 Cme-Chr7:521716 2.39E-07 dispersed
Cme07g00083 Cme-Chr7:521716 Cme09g01757 Cme-Chr9:22043311 2.29E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00713 . 52 334 ARID Transcription Factor Family AT1G04880 56.0 8.5e-77 284.6
Cme06g02319 . 208 478 ARID Transcription Factor Family AT1G20910 61.4 1.8e-91 333.2
Cme07g00083 . 99 393 ARID Transcription Factor Family AT1G76110 68.2 1.9e-113 406.0
Cme06g02319 . 187 508 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cme04g01382 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.6 3.7e-266 914.4
Cme01g02766 CCT,ECH 87 810 ARID Transcription Factor Family AT3G43240 54.3 1.8e-233 805.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41589 PF01388 ARID 4.50E-18 CL0123 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00083 Cme_Chr07 FPKM 4.959222 7.476481 25.162199 26.652012 1.93982 1.648619 2.234772 0.839244 0.594946 0.421396