Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00086 ATGCCACGTCATAGGCCACCGGCATTTTCAGTTCTAGTTCTCGCTGCATTCTCACTCTGCTGTTCCCCTGCTTTAGTTTCCTTCTCCCATGGCGATTCTCAAATTCCACCTATCTCAGAATGGAGAACTGAAGACTATTACTCCGGTGTGGAACTTGTTGGGGTAAGTCCGAGTGGGTCTGTTGTGGAAGGCCCTACAATGGAGCCTGTTGAGTACTCGTTATTTGTGTTGGCAGCTGAAAGAACTCGAAGAAAAGATCCTCTTAATGGCTTTCAAGCTTACACTAGTGGGTGGAATATCAGCGACCGCCATTATTGGGCTTCTGTTGGCTTCACGGCAGTTCCTTTGTTTGCTGTTGCTGCAGCCTGGCTTTTGGGTTTTGGGCTTTGCTTATTGGTCGTCTCTCTTTGTTACTTCTGTTGCGGAAGGCAGTCATATGGCTATTCTCGAATGGCTTATGCTCTTTCACTTCTTTTCCTCATTCTGTTCTCCATTGCATCAATCATAGGATGTGTTATTTTATACACTGGTCAAGGAAAGTTTCACAATAGTACATCAGAAACATTGGAATATGTTGTAAGTCAAGCAGATTTGACTGCTCAAAAGCTTCGTGATGTTTCGGATTATTTTGCTGCAGCCAAACAGACTGGAGTGGATCAAGTTTTTCTGCCATCTGATGTTCAAACTGACATTGATCAAATTGAGATAAAGATAAACTCTTCTGCTAGTATTCTTGACGACAAAACTGTGCACAACTCAAATGACATAAAAGATCTCCTTGATTCTATTCGTCTGGCTCTTATAATCGTTGCAGCTATTATGCTTCTGCTGACATTTCTTGGATTCTTATTCTCCATATTTGGTATGCAACTTCTCGTCTACATCCTGGTGATAACTGGCTGGTTACTTGTAACTGGGACATTCATCTTATCCGGCACATTCCTTGTTCTCCACAACGTGGCTGCGGATACTTGTGTTGCAATGGACCAGTGGGTTCGCAATCCTACTGCGCATACGGCCTTAGATGACATTCTTCCCTGTGTGGATAAAGTGACTGCCCAAGAAACCCTGTTAAAAAGCAAGGAAGTGAGTGCACAACTTGTCGATCTGGTCAATGAGGTGATCACCAATGTTTCCAACATAAATTTTTCACCGAACTTCAAACCTATGTACTTCAACCAATCTGGTCCGGTTATGCCAACTCTTTGTAACCCATTTCACCCAGATTTGACACCAAGAACTTGTTCTTCTGGTGAAGTAGACTTGCAAAATGCTACACAAGTATGGGGCAACTATGTCTGCCAAGTTTCGCCTACTGGTGATATATGCATCACAACAGGGCGGTTGACTCCAAGCTTGTACAGCCAGATGGCGAGTGGAGTTAATTTAAGTTATGCACTTTTAAATTATAGCCCTACTTTGGTCGAGCTTCAAGATTGCACGTTTGTTCGACAGACATTTGATGACATTCATAGAAAATTTTGTCCTGGTCTACAACAATACAGCAGATGGGTCTATGTTGGATTAGCAACCGTCTCCATTGCTGTTATGCTGTCTTTGATATTATGGATTATTTATGGTCGAGAACGGCACTATCGTGCTTCTGGAAAAGGGTTCACTTCTAAACCAACTGACGAGGAGTTGGAGGGGACCAAAGAATCTTGA 1665 42.94 MPRHRPPAFSVLVLAAFSLCCSPALVSFSHGDSQIPPISEWRTEDYYSGVELVGVSPSGSVVEGPTMEPVEYSLFVLAAERTRRKDPLNGFQAYTSGWNISDRHYWASVGFTAVPLFAVAAAWLLGFGLCLLVVSLCYFCCGRQSYGYSRMAYALSLLFLILFSIASIIGCVILYTGQGKFHNSTSETLEYVVSQADLTAQKLRDVSDYFAAAKQTGVDQVFLPSDVQTDIDQIEIKINSSASILDDKTVHNSNDIKDLLDSIRLALIIVAAIMLLLTFLGFLFSIFGMQLLVYILVITGWLLVTGTFILSGTFLVLHNVAADTCVAMDQWVRNPTAHTALDDILPCVDKVTAQETLLKSKEVSAQLVDLVNEVITNVSNINFSPNFKPMYFNQSGPVMPTLCNPFHPDLTPRTCSSGEVDLQNATQVWGNYVCQVSPTGDICITTGRLTPSLYSQMASGVNLSYALLNYSPTLVELQDCTFVRQTFDDIHRKFCPGLQQYSRWVYVGLATVSIAVMLSLILWIIYGRERHYRASGKGFTSKPTDEELEGTKES 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 534228 538523 + MELO3C016996.2.1 Cme07g00086 332102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00086 554 PANTHER TRANSMEMBRANE PROTEIN 62 544 - -
Cme07g00086 554 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 62 544 IPR040283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00086 - - - csv:101218626 1053.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01840 Cme-Chr5:27217111 Cme07g00086 Cme-Chr7:534228 2.56E-159 dispersed
Cme07g00086 Cme-Chr7:534228 Cme10g00201 Cme-Chr10:1357174 1.01E-133 dispersed
Cme07g00086 Cme-Chr7:534228 Cme02g01111 Cme-Chr2:16115958 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g548 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01713 Cam05g1828 Cec05g1840 Cco05g1898 Clacu05g1814 Cmu05g1699 Cre05g1828 . . . . Lsi04g02106 . . . . . . . . . . . . Cmo01g01572 . . . . . . Cpe02g00437 Bhi09g02945 . . . . . . . . . . . . . . . . Cme07g00086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011124 1 4 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00086 Cme_Chr07 FPKM 0.0 0.0 12.321522 15.673013 1.570054 0.0 0.0 3.229743 4.127585 3.180143