Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00090 ATGGGGAAGCCAACGGGAAAGAAGAAGGAAAATGTTGGGGAGAAGCCTGGGAATACTAATTCTAAGACTGCTCGGCCCTCTGACCGGAATTCGAAGGCGTTCGATGAAGACACGGCGATTTTCATAAACATGTCCCAAGAGCTTAAGGAGGAAGGCAACCGGCTATTTCAGAAGCGAGATCATGAAGGCGCCATGTTGAAATATGAGAAAGCTCTTAAGCTTTTGCCGAGAAATCATATTGATGTTGCTCATCTCCATAGCAACATGGCTGCTTGTTATATGCAATTGGGATTGGGCGAGTATCCACGGGCGATTAACGAGTGCAATTTGGCGTTGGAGGCTCATCCAAGGTACAGCAAGGCGTTGTTGAAGAGAGCAAGGTGTTACGAGGCTTTGAATCGGTTTGATTTGGCGTTGAGAGATGTCAATACTGTTTTGAGCTTGGAGCCTAATAACTTCTCTGCGTTGGAGATTTTGGATAGTGTCAAGAAGACGATGAGAGAAAAGGGTGTTGATATTGATGAGAAAGAAATTGGTTTGGCCAGCGTAAAGCTACCTCCCGGAGCGCATTTGCGAAAGGTGGTTAGGGAGAAACTAAGGAAGAAGAAGAATAAGAAAATTGATGAAAAGACAGATGATAAGTTGATTGTGGAGGAGAAGGTTGATCAAGTGATTCAAGTTGATCATGTTGAAGATAAGGAAGTTACAATAAATACTATTGAGGAAGACAAACTGTTCATTGAACCGATTGAGGAAAAACCGGTCTCAAAGACAGTGAAGTTAGTATTTGGAGAAGACATAAGATGGGCACAGTTACCTACAAATTGCAGCATGAAATTGGTGAGCGAGATAGTTCGAGACAGATTTCCAAGCTTGAAGGGTGTTCTTGTGAAGTACAGAGATCAAGAGGGTGATTTGGTTACAATTACTACCACAGAGGAGTTAAGGTCGGTTGAATCATCTAGTCAGTCGCAGGGTTCACTTAGACTTTACATCACAGAGGTCAGTCCTGACCAGGAACCTGCCTACAAGGAAATCGAGAGCGAGGAGAAGCATCCAGAGGTTGTTGGTAAAAGAAAAAATACAGCGGTGATGAATGGGGATTCGGTAAATGACAAAGAGATTGTAAGGGGAACGACCACGGTTGAGGACTGGATAGTCCAGTTTGCACGATTGTTCAAGAACCATGTTGCGGTTGATTCTGATTCATACTTAGATCTTCATGAGCTTGGAATGAAGCTGTACTCGGAAGCGATGGAGGATTCAGTAACAGGAGATAGTGCACAGGAACTTTTTGAAATTGCTGCTGATAAGTTTCAAGAAATGGCAGCTCTGGCATTCTTCAACTGGGGCAATGTTCACATGTCCAGGGCAAGGAAGCAGGTGTTCCTTCCAGAAGACAGTTCGAGAGAAACTCTACTTCTACGGATTAAGGATGCATATGAATGGGCACGAAAAGAATACAAAAAAGCCGAAATGAGATACGAAGAAGCTCTAAATGTAAAACCTGACTTCTATGAAGGTTTCCTTGCACTTGGGCAGCAGCAGTTTGAGCAGGCTAAGCTTTGCTGGTATTATGCTATTGCTAGTGGAAGCAAAATCGATTTGGAATCGAGCTTCTCCACAGAGGTCTTACAACTTTATAACAAGGCCGAGGACAGCATGGAGAAGGGCATGCTGATGTGGGAAGAAATGGAGGAACAGCGCCTGAATGGACTCTCCAAAAGTGAAAAATACAGATCTGAGTTAGAAAAAATGGGATTGGAAAAACTATTTACTGAGATACCTGCTGATGAAGCCGCAGAGCTGGCTTCAAACATGAGATCACAGATATACCTTTTATGGGGCACCTTGTTGTATGAGCGTTCTGTCGTGGAATATAAGATCGAGCTACCAACCTGGGAGGAATGTTTGGAAGTGTCGGTGGAGAAGTTCGAACTTGCTGGGGCTTCCCAAACAGATATTGCAGTTATGATAAAGAATCATTGTTCCAATGAAACAGCACTGGAAGGTTTCGGCTTCAAAATCGATGAGATCGTGCAGGCATGGAATGAAATGTATGATGCTAAAAGGTGGCAATTTGGCGTTCCATCTTTCCGCCTCGAGCCTTTATTTCGACGTCGGGCTCCAAAACTTCACTTCACTCTCGAACATTTTTGA 2160 43.7 MGKPTGKKKENVGEKPGNTNSKTARPSDRNSKAFDEDTAIFINMSQELKEEGNRLFQKRDHEGAMLKYEKALKLLPRNHIDVAHLHSNMAACYMQLGLGEYPRAINECNLALEAHPRYSKALLKRARCYEALNRFDLALRDVNTVLSLEPNNFSALEILDSVKKTMREKGVDIDEKEIGLASVKLPPGAHLRKVVREKLRKKKNKKIDEKTDDKLIVEEKVDQVIQVDHVEDKEVTINTIEEDKLFIEPIEEKPVSKTVKLVFGEDIRWAQLPTNCSMKLVSEIVRDRFPSLKGVLVKYRDQEGDLVTITTTEELRSVESSSQSQGSLRLYITEVSPDQEPAYKEIESEEKHPEVVGKRKNTAVMNGDSVNDKEIVRGTTTVEDWIVQFARLFKNHVAVDSDSYLDLHELGMKLYSEAMEDSVTGDSAQELFEIAADKFQEMAALAFFNWGNVHMSRARKQVFLPEDSSRETLLLRIKDAYEWARKEYKKAEMRYEEALNVKPDFYEGFLALGQQQFEQAKLCWYYAIASGSKIDLESSFSTEVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSEKYRSELEKMGLEKLFTEIPADEAAELASNMRSQIYLLWGTLLYERSVVEYKIELPTWEECLEVSVEKFELAGASQTDIAVMIKNHCSNETALEGFGFKIDEIVQAWNEMYDAKRWQFGVPSFRLEPLFRRRAPKLHFTLEHF 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 553799 557689 + MELO3C016991.2.1 Cme07g00090 332106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00090 719 SUPERFAMILY TPR-like 393 519 IPR011990 GO:0005515
Cme07g00090 719 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Cme07g00090 719 SUPERFAMILY CAD & PB1 domains 246 345 - -
Cme07g00090 719 MobiDBLite consensus disorder prediction 1 15 - -
Cme07g00090 719 Gene3D Tetratricopeptide repeat domain 40 179 IPR011990 GO:0005515
Cme07g00090 719 PANTHER PROTEIN CLMP1 1 719 IPR044517 -
Cme07g00090 719 SMART PB1_new 256 335 IPR000270 GO:0005515
Cme07g00090 719 MobiDBLite consensus disorder prediction 1 33 - -
Cme07g00090 719 PANTHER PROTEIN PHOX4 1 719 - -
Cme07g00090 719 Coils Coil 481 501 - -
Cme07g00090 719 CDD PB1 258 333 - -
Cme07g00090 719 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Cme07g00090 719 ProSiteProfiles PB1 domain profile. 256 335 IPR000270 GO:0005515
Cme07g00090 719 Pfam PB1 domain 257 333 IPR000270 GO:0005515
Cme07g00090 719 Gene3D - 255 335 - -
Cme07g00090 719 SUPERFAMILY TPR-like 34 166 IPR011990 GO:0005515
Cme07g00090 719 SMART tpr_5 83 118 IPR019734 GO:0005515
Cme07g00090 719 SMART tpr_5 45 78 IPR019734 GO:0005515
Cme07g00090 719 SMART tpr_5 472 505 IPR019734 GO:0005515
Cme07g00090 719 SMART tpr_5 119 152 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00090 - - - csv:101217917 1358.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01117 Cme-Chr2:16161878 Cme07g00090 Cme-Chr7:553799 0 dispersed
Cme07g00090 Cme-Chr7:553799 Cme12g00895 Cme-Chr12:15780637 6.33E-164 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00090 Cme_Chr07 FPKM 7.558816 4.8523 7.052669 8.398442 8.626508 7.731621 9.150061 20.651178 19.68121 22.050995