Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00094 ATGGCGTATCACAATCACCTCTCTCAAGACCTTCCTCTTCACTTCTCTGACCACCACCACCAAAATCAACCTCTCTCTGATTCTTCTTCTCTCCGTAACATTCTGCCGGACCAACTTCCCGCCGGCCACACCTCGCCGGACCCCAAGTCTCAACAACCCCATCATCACCACCATCATCAACACCCTCTTCAGACCGCCCCCAATTGGCTCAACAACGCACTCCTTCGTAACCAAAACCCCCATTCTCACTTCTCTACCGACACCGCCACCACCGCCGCTGCTGCTAATACTAATTTCCTCAACCTTCATACAACTGCATCTGATTCTACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGTCCGATTCTTCACCGTAACCATAGCGATGTTATAGATGATGTCGCCGCCGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTGTCTCATGATTCTGGTGACTTGAAGAACGATGCTAATAGTGGTGATGGATTGAATAAAAGTGAAGGTATGGTGATGGAACCTGGTGCGGGTGGAGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTATGAGCAGCTTCTCTCCGCTCATGTTGCTTGTCTTCGTATCGCGACCCCGGTCGATCAATTACCGAGGATCGACGCTCAGCTCGCTCAGTCTCAGAATGTCGTCGCCAAGTACTCCGCCTTGGGCCACTCGGCTCCACCGTCCATGGTTGGTGATGATAAAGAGGTCGATCAATTCATGACACATTACGTTCTTTTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGAGTTCATGCTATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCTTACAAAGTTTAACAGGAGTTTCACCTGGCGAAGGTACAGGAGCAACAATGTCCGACGACGACGAGGACCAAGTTGACAGTGATGCAAATCTGTTTGATGGAAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTAATGGAGAGGGTCAGGCAAGAACTGAAGCACGAATTAAAAGCGGGTTACAAGGAGAAAATTGTTGATATAAGGGAAGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAAGAAGACAAGGCAAGATTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGGTACAATATAAATTCCTTAAAAAATTTTTTGAGTATATGTCTATTTCTTTTCTTTACGATTTTTAACTTAAACGAACTTGCACCAACCTTAATTTGA 1470 46.53 MAYHNHLSQDLPLHFSDHHHQNQPLSDSSSLRNILPDQLPAGHTSPDPKSQQPHHHHHHQHPLQTAPNWLNNALLRNQNPHSHFSTDTATTAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKEVDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRYNINSLKNFLSICLFLFFTIFNLNELAPTLI 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 577212 581588 - MELO3C016988.2.1 Cme07g00094 332110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00094 489 Gene3D - 382 443 - -
Cme07g00094 489 SMART ELK_2 361 382 IPR005539 GO:0003677
Cme07g00094 489 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 54 460 - -
Cme07g00094 489 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 460 - -
Cme07g00094 489 MobiDBLite consensus disorder prediction 14 63 - -
Cme07g00094 489 SMART KNOX2_2 249 304 IPR005541 GO:0003677|GO:0005634
Cme07g00094 489 SUPERFAMILY Homeodomain-like 383 448 IPR009057 -
Cme07g00094 489 Pfam ELK domain 361 382 IPR005539 GO:0003677
Cme07g00094 489 Pfam Homeobox KN domain 401 440 IPR008422 GO:0003677|GO:0006355
Cme07g00094 489 Pfam KNOX2 domain 253 303 IPR005541 GO:0003677|GO:0005634
Cme07g00094 489 ProSiteProfiles 'Homeobox' domain profile. 381 444 IPR001356 GO:0003677
Cme07g00094 489 ProSiteProfiles ELK domain profile. 361 381 IPR005539 GO:0003677
Cme07g00094 489 Pfam KNOX1 domain 194 235 IPR005540 GO:0003677|GO:0005634
Cme07g00094 489 SMART HOX_1 383 448 IPR001356 GO:0003677
Cme07g00094 489 CDD homeodomain 384 445 IPR001356 GO:0003677
Cme07g00094 489 SMART KNOX1_2 192 236 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00094 Cme-Chr7:577212 Cme08g00429 Cme-Chr8:2617977 9.03E-30 dispersed
Cme07g00247 Cme-Chr7:1603493 Cme07g00094 Cme-Chr7:577212 5.65E-08 dispersed
Cme09g01708 Cme-Chr9:21722415 Cme07g00094 Cme-Chr7:577212 1.10E-131 transposed
Cme03g01594 Cme-Chr3:24942792 Cme07g00094 Cme-Chr7:577212 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41590 PF03791 KNOX2 4.10E-20 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00094 - - csv:101217292 892.493