Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00097 ATGCTGTCGGTTCTTTGTGAGGCATTAGATTTGCAGACGACCAAAGCAGCCACTTGTGCTGCCCCTTTTCTAAGTGGGCTCTCAAAAGTGATTCGTTCCATTCAGAGGCGTCATTTTGAGCAAATAAAAGTAGCAGTTCCTGTTGTTCTCAATGCACTTAAAGCCGTGGATTTTGAAACAAGTGAAGGGGATGTGAACTGTGACACTTTATATGCTAGAGCGATGGACATTGCCAGTTCCATTCAGTCAGTTTGTGTAAAGTTGGTGGATGGCAAAGTACAGGAGAAGCTCCATTCTCTGCTTGGACTCTATGTGTTGCAAATCATGGCTCTCTTTTCAGTCAGCATGAGTCATGAAGTTTCAAGCTGTCTTCCTTTTGTCTCAAAGTTGTCATCCTTTCTTCCATTCTGTGGGTTGTCATACGCTGGTCTTATCACTGGATTCGATATCGACAAAATTTCTAATAACATTATTGGAGAGGATGAAGATGATTATACGGCCTGTTTTTCCTACATCAAGCACGGTGCATGTCTTTCAGTTCTCTGGGGATTTATTTCTGAAGAGGTTGCTCAGGCTGCAGATGAAAAAGTTAATGTTCTTAAAGATGAACTGACGTCCAAACAAACTGAAAGATGGAAAGCTATAGGCATGTTCAGGCACATACTCTCTTTTGCCGCTCTATCTTGGAAACTAAAGAAACATGCCATCGATTTCTTGCTCTGCATTCATGGGTCTGAAAGTTTTGATGACAAACAAAGTGACTACATATCGTATATGCCTAGTTTATTTGCTGCTTTGCAGGCTGTTCAAATAATTATCATGTATGCACCAGATGCAACACTACGGAGGAATGGGTTTGATTTATTTAAAAAGGTTGGACTTCTTTTAGATCTTGTCAAAGGAGAAATGCATGCGGAGCTTTGCCAGAAAAGAGCAGCTGGCAGTTTGCAAGTTGATACCAAAGCACGTTCAGAACCATCATTTTGCACTCCAAGTATCCTAGAATTGGTGGAGCTCGTTTTGAGGCCTCCGAAAGGGGGGCCTCCAGTGCTTCCAGAGCAAAGTGATGCGGTTCTTTCGGCCCTCAATCTATACCGTTACGTGCTGATAACCGAGGCAACAGGAAACACAAACTATACTGGGGTTTTGTTGAAGAGCAATTTGCAGAAATCCTATAACGAATGGCTTCTCCCTCTCCGGACGTTAGTGACGGGGATAATGTCGGAGAACAAGACCGATTATGATGAGATTACGGTGGACATAGAGTGTGCCTTAAACCCTGTAGAGCTTGTATTATATCGTTGCATCGATCTTGTCGAAGAGAAGTTGAGATGA 1335 42.7 MLSVLCEALDLQTTKAATCAAPFLSGLSKVIRSIQRRHFEQIKVAVPVVLNALKAVDFETSEGDVNCDTLYARAMDIASSIQSVCVKLVDGKVQEKLHSLLGLYVLQIMALFSVSMSHEVSSCLPFVSKLSSFLPFCGLSYAGLITGFDIDKISNNIIGEDEDDYTACFSYIKHGACLSVLWGFISEEVAQAADEKVNVLKDELTSKQTERWKAIGMFRHILSFAALSWKLKKHAIDFLLCIHGSESFDDKQSDYISYMPSLFAALQAVQIIIMYAPDATLRRNGFDLFKKVGLLLDLVKGEMHAELCQKRAAGSLQVDTKARSEPSFCTPSILELVELVLRPPKGGPPVLPEQSDAVLSALNLYRYVLITEATGNTNYTGVLLKSNLQKSYNEWLLPLRTLVTGIMSENKTDYDEITVDIECALNPVELVLYRCIDLVEEKLR 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 607559 612930 + MELO3C016986.2.1 Cme07g00097 332113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00097 444 Coils Coil 190 210 - -
Cme07g00097 444 Pfam Uncharacterised protein family, YAP/Alf4/glomulin 296 414 IPR013877 -
Cme07g00097 444 PANTHER GLOMULIN 292 443 IPR019516 -
Cme07g00097 444 PANTHER GLOMULIN 1 292 IPR019516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00097 K23345 GLMN; glomulin - csv:101214985 820.846
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g537 . . . . . . Bma04g00082 . . . Cma01g01482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00070 . . Sed13g1993 Cmo01g01538 . . . . . . . Bhi09g02969 Tan01g3596 Cmetu07g1020 . Hepe01g1987 Mch11g0524 . . . . . . . . . . . Cme07g00097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006494 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00097 Cme_Chr07 FPKM 34.418095 38.418842 144.089981 141.609329 390.438721 421.980804 378.773285 43.837536 44.644962 39.435303