Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00099 ATGGAAGCTCGGAAGAGAATAGGAGTGGCTGTGGCTGGATTTTGCTCTGCCCTGCTTATCGCTGCTTTGTTTTCATTGCTCTGGTTGTGGATTCACCGGCAGAGGAGAAATGCTAGTAAAAGCAAACGGAAAGATGTTGAGAAAGGGATGGGATTAGCTCCATTTGTGACTGGGAAGAAGGGATGTGTATCGGTGATTGATTTCAAAGTATTGGAGAAAGCTACTGGGAATTTTGGGGAGAGTAATGTATTGGGTGAAGGTGGGTTTGCGAGAGTTTATAAGGCTTTGTTGGATGATAATTTGGTCGTGGCTGTGAAGAAGCTTGACTGCAGTGGCCTTCAAGCTGACACAGAATTTGAGAATGAAGTGAATATATTGAGCAGAATTCATCATCCGAATATTATTTGCCAATTGGGATGTAGCAGTGAGGGAGATGCAAAGTTGATTGTTTATGAGCTCATGGAGAATGGATCTCTAGAAACTCAACTCCATGGGCCCTCTCGTGGTTCGGCCTTAAATTGGCACATGCGGATGAAGATTGCTCTCGATGTTGCAAGAGGATTAGAATACCTTCACGAGCATTGCCAGCCTGCAGTTATTCATAGAGATTTGAAGACTTCCAACATCCTTCTTGATGCCAACTTCAACGCTAAGTTGGCTGACTTTGGGATTGCAATCACTGATGGAACCCAAAACAATAACAAAATTAAGCTTTCTGGCACCTTGGGATATGTAGCTCCAGAGTATCTATTACATGGTAAATTAACAGAAAAAAGTGATGTGTATGCTTTTGGAATTGTGGTACTAGAGCTTCTGCTTGGAAGAAGGCCGGTGGAGAAACGGCCAACACCACAATCCCACTCTATCGTCACGTGGGCGATGCCTCAACTCACAGATAGATCGAAGTTACCAAACATAGTAGATCCTGTTATTAGAAATACTATGGACCTCAAACACTTGTATCAGGTTGCTGCAATGGCTGTGTTGTGTGTACAAGGAGAATCAAGCTATAGGCCTCTAATTAAAGATGTTCTACACTCTCTAATTGCCCTTGTTCCCATAGAGCTTGGAGGTACCCTAAGATTAAACACACCACCACAATGA 1104 43.21 MEARKRIGVAVAGFCSALLIAALFSLLWLWIHRQRRNASKSKRKDVEKGMGLAPFVTGKKGCVSVIDFKVLEKATGNFGESNVLGEGGFARVYKALLDDNLVVAVKKLDCSGLQADTEFENEVNILSRIHHPNIICQLGCSSEGDAKLIVYELMENGSLETQLHGPSRGSALNWHMRMKIALDVARGLEYLHEHCQPAVIHRDLKTSNILLDANFNAKLADFGIAITDGTQNNNKIKLSGTLGYVAPEYLLHGKLTEKSDVYAFGIVVLELLLGRRPVEKRPTPQSHSIVTWAMPQLTDRSKLPNIVDPVIRNTMDLKHLYQVAAMAVLCVQGESSYRPLIKDVLHSLIALVPIELGGTLRLNTPPQ 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 629380 635205 + MELO3C016983.2.1 Cme07g00099 332115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00099 367 ProSiteProfiles Protein kinase domain profile. 78 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00099 367 PANTHER BNAA04G14780D PROTEIN 5 364 - -
Cme07g00099 367 SMART serkin_6 78 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00099 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Cme07g00099 367 Pfam Protein kinase domain 81 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00099 367 PANTHER OS01G0750732 PROTEIN 5 364 - -
Cme07g00099 367 Gene3D Transferase(Phosphotransferase) domain 1 154 354 - -
Cme07g00099 367 CDD STKc_IRAK 84 348 - -
Cme07g00099 367 Gene3D Phosphorylase Kinase; domain 1 38 153 - -
Cme07g00099 367 SUPERFAMILY Protein kinase-like (PK-like) 63 348 IPR011009 -
Cme07g00099 367 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00099 - - - csv:101214742 704.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00099 Cme-Chr7:629380 Cme12g00367 Cme-Chr12:5086706 2.86E-96 dispersed
Cme01g02564 Cme-Chr1:33540737 Cme07g00099 Cme-Chr7:629380 4.29E-158 wgd
Cme03g01592 Cme-Chr3:24917943 Cme07g00099 Cme-Chr7:629380 2.02E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g535 . . Bda01g00757 . . . . . . . . . . . . . . Bhi04g00032 . . . . . Lcy13g1813 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g02972 . . . . . . . . . . . . . . . . Cme07g00099
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003093 2 2 1 1 0 2 1 2 2 2 2 2 2 2 0 2 3 0 2 1 2 2 0 0 0 1 1 2 1 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64991 PF00069 Pkinase 1.10E-46 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00099 Cme_Chr07 FPKM 0.179916 0.0 0.0 0.0 0.0 0.0 0.0 11.14342 12.932693 10.86173