Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00103 ATGTTTTTCTCTCACGCATTTTCACAAACACCTTCTGGGGAGGAAATACAAACAAGTTATGCCATGGCCAGGCCTCAAAAGCGCTACCGCGGTGTAAGACAAAGGCATTGGGGTTCTTGGGTTTCCGAAATTCGCCATCCTTTATTGAAAACAAGAATTTGGCTGGGGACATTTGAAACGGCGGAGGATGCAGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAGTTCAAGTGCAATTCAATCATCAAATTCTAGGATTTTATCGTCTAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGGTTCAGGGGAGGAGTTTAAAAGGGACATTACCTCGGCGTTTCCGGCACCCGCGTCGACGAGTTCGGTGGTGGAGGATATTATACCGGCGGCGGAAGAAGGGCCGTGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAGAGTGAATTTGGGGAACTGAAATTGTTGGAAGATGATCATATTGAGCAAATGATTGAGGAGCTTCGTTATTATGGATCCATGGAGTTTTGTTTGTGA 600 44.83 MFFSHAFSQTPSGEEIQTSYAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYSSSAIQSSNSRILSSNLTAKLHRCYMASLQISNQGSGEEFKRDITSAFPAPASTSSVVEDIIPAAEEGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELRYYGSMEFCL 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 640263 641102 + MELO3C016980.2.1 Cme07g00103 332119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00103 199 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Cme07g00103 199 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Cme07g00103 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 198 - -
Cme07g00103 199 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Cme07g00103 199 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Cme07g00103 199 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Cme07g00103 199 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Cme07g00103 199 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Cme07g00103 199 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
Cme07g00103 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 22 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01203 Cme-Chr2:17354064 Cme07g00103 Cme-Chr7:640263 7.30E-31 dispersed
Cme03g01589 Cme-Chr3:24902355 Cme07g00103 Cme-Chr7:640263 2.80E-67 dispersed
Cme05g01917 Cme-Chr5:27852221 Cme07g00103 Cme-Chr7:640263 2.07E-31 dispersed
Cme07g00103 Cme-Chr7:640263 Cme07g02066 Cme-Chr7:25529775 6.02E-37 dispersed
Cme07g02041 Cme-Chr7:25368178 Cme07g00103 Cme-Chr7:640263 2.47E-46 transposed
Cme01g02563 Cme-Chr1:33532979 Cme07g00103 Cme-Chr7:640263 6.87E-52 wgd
Cme03g01588 Cme-Chr3:24896021 Cme07g00103 Cme-Chr7:640263 9.09E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41591 PF00847 AP2 7.60E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00103 - - cmo:103493770 380.563