Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00105 ATGTTGTGCAGAATTGCTTTGATGTCGAAGAAGAAGAAGAGTGGAACAGTACCGGTTTATTTGAATGTGTATGATTTAACGCCCATCAATGGCTACGCGTATTGGCTGGGTCTTGGGGTTTACCATTCCGGTGTGCAAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAACATGCAACTTCAGGTATATTTGAGGTAGAACCAAGACAATGTCCTGGTTTTACATTTAGGAAATCAATTTGCATTGGAAGAACGAATCTTGGTCCGAAAGAAGTTCGCTCGTTTATGGAGAAACTTGCTGAAGAGTACTCCGGGAACACTTATCATCTTATAACAAGGAATTGCAACCACTTTTGCAATGATGTATGTATAAGGTTGGCAGGGAAACCGATCCCTAGCTGGGTCAACCGACTTGCTCGACTTGGTCTTTTCTGCAACTGCGTTCTTCCAGCGAGTTTGAACGAAGCAAAGGTTCGACAAGTAAGATCAGGAGATAAGCTTAATGAAGGTGTAAAGAAGAAATTGAGAAGCCAGCCAAATAGGTGTAATAATAAATCTTCTTCTAACCCTTCACCACCACCCTTGCCTTCCAATCCTCCAACTTCATCAACCATCAAAGTAACTAGACCAACTAGACAAAAACGATGTATCCCATCAGCATCGTCGGCGATTCATTCTTCAGCATCTACAACCCTGACTGCGTAA 708 42.37 MLCRIALMSKKKKSGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEHATSGIFEVEPRQCPGFTFRKSICIGRTNLGPKEVRSFMEKLAEEYSGNTYHLITRNCNHFCNDVCIRLAGKPIPSWVNRLARLGLFCNCVLPASLNEAKVRQVRSGDKLNEGVKKKLRSQPNRCNNKSSSNPSPPPLPSNPPTSSTIKVTRPTRQKRCIPSASSAIHSSASTTLTA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 649752 652428 - MELO3C016978.2.1 Cme07g00105 332121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00105 235 Gene3D PPPDE domains 12 169 IPR042266 -
Cme07g00105 235 PANTHER OS02G0788133 PROTEIN 7 230 - -
Cme07g00105 235 PANTHER DESUMOYLATING ISOPEPTIDASE 7 230 IPR008580 GO:0008233
Cme07g00105 235 Pfam PPPDE putative peptidase domain 18 152 IPR008580 GO:0008233
Cme07g00105 235 MobiDBLite consensus disorder prediction 165 235 - -
Cme07g00105 235 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Cme07g00105 235 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Cme07g00105 235 MobiDBLite consensus disorder prediction 202 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00105 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - csv:101215693 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01035 Cme-Chr6:7501700 Cme07g00105 Cme-Chr7:649752 3.18E-24 dispersed
Cme07g00105 Cme-Chr7:649752 Cme11g00474 Cme-Chr11:4625336 3.73E-73 dispersed
Cme01g01741 Cme-Chr1:24368134 Cme07g00105 Cme-Chr7:649752 1.65E-07 transposed
Cme03g01972 Cme-Chr3:27597781 Cme07g00105 Cme-Chr7:649752 3.86E-77 transposed
Cme04g01530 Cme-Chr4:21994211 Cme07g00105 Cme-Chr7:649752 3.24E-10 transposed
Cme09g01586 Cme-Chr9:20732497 Cme07g00105 Cme-Chr7:649752 1.48E-75 transposed
Cme01g02561 Cme-Chr1:33519188 Cme07g00105 Cme-Chr7:649752 1.80E-81 wgd
Cme03g01586 Cme-Chr3:24881247 Cme07g00105 Cme-Chr7:649752 2.88E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00105 Cme_Chr07 FPKM 1.058058 1.311821 1.015185 0.594031 0.0 0.22648 0.0 0.0 0.0 0.0