Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00108 ATGACGGTTGAGCCTAGACTCGAAGACCCAGTTGACCAATTTCCCACTGGAATGCGTGTTCTTGCTGTTGACGATGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACTAATCAGGCTGTTATGGCACTCAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTCATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGTGATTACTTGTTGAAGCCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCAAAGGATCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAATCAGCAGATCTAAATGGGAAATTTAATAAAAAGAGGAAGGACCAGAACTATAATGAAGATGATGACCAGGACTATGGGCAAGATAATGATGACTCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTACATAGGAAGTTTGTAAATGCAGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTTGAAAAGCTCACACGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGGATCAGCTGTGTGGCAAACCAGCAAGCTAATATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTGGCGGAATTGGGAATTTCCACTCTTTGACTGGACCTCCACAGTTTCCAAACACTTCATATAGATCTATCCCAACCACTGGGATGTTCGGTCGATTGAATACGCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTGGGTAATTTGAGCAATTCTAGCAATGATCAGTCTACCTTTCATCCAATCGTGCTTTCTGGAAACCGCAGTGGGAATATTTTCCGTGGAATGCCTGAGCCATCAGAACTTGATCAACTCCAACATGTTAAGCATGGGACTCACGTGGACAATCTCTCTTCTGCTTTTGATGAACGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGGAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATTCCTCGATTCCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCAGTCTTCTATTGCGGTAGTATCTTCAAATTCAGATAGCTCACGTCCTTCATTAGATAATGTTAGATGCACTGGTGACAATTGGTCAAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCTGGCAACCTTTCTAATGTTGCTACTTCCTACCATGGGCAGTTGAGAGATAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATATCTTCTATAACTTCATTATCTACTCAGTCCCATGAATCGAGAATAGATTCTCAACGTCAAGCAGCTACAACTAGCAACAGATTTGATCAAATGATATCAAAGGTTCCTGTTCAGGATTGGAATGATCATAAAGAGGATGCCTATTACCACACAACTATGGCCTGTAGCTCGTCTAATTCTTTGATTCCAGTGAATGGTGCTGCAGAGACTTTGTCCAAGCGTTTGGAAAATCCTAATGCAATCTTCTCTGGTAGCAAGGATTTTAATGTGACTGCTCAAGCAAATGTTCTTGATCATGCAATGGTGGAACATGATCGACTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCCAGATTTTCATCGAGCAACTGTGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGAGTTTGGATGTGATAACTATCCCATTGGAACATGCATGTGA 2070 42.13 MTVEPRLEDPVDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEESADLNGKFNKKRKDQNYNEDDDQDYGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLGGIGNFHSLTGPPQFPNTSYRSIPTTGMFGRLNTPACMGMHGLSSPGTVQLGNLSNSSNDQSTFHPIVLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDNLSSAFDERTVFPASIGLPNGNMSSSTLSNPLLGLTNDSSIPEVQHHEVNGGRKFGTQSSIAVVSSNSDSSRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSGNLSNVATSYHGQLRDNTTSALHIGNCLSDISSITSLSTQSHESRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDAYYHTTMACSSSNSLIPVNGAAETLSKRLENPNAIFSGSKDFNVTAQANVLDHAMVEHDRLKKSTMETSLMLKQGYLYDHQQKMQSRFSSSNCGSLEDIACAMMKQEQDDGKLLEGEFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 673597 678483 + MELO3C016975.2.1 Cme07g00108 332124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00108 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Cme07g00108 689 Gene3D - 17 152 - -
Cme07g00108 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Cme07g00108 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Cme07g00108 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Cme07g00108 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Cme07g00108 689 MobiDBLite consensus disorder prediction 141 180 - -
Cme07g00108 689 Gene3D - 193 256 - -
Cme07g00108 689 CDD REC_typeB_ARR-like 20 134 - -
Cme07g00108 689 SUPERFAMILY CheY-like 16 142 IPR011006 -
Cme07g00108 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme07g00108 689 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cme07g00108 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cme07g00108 689 MobiDBLite consensus disorder prediction 141 196 - -
Cme07g00108 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 664 - -
Cme07g00108 689 SMART REC_2 18 130 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00108 - - K14491 csv:101215220 1325.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02198 Cme-Chr3:28932154 Cme07g00108 Cme-Chr7:673597 1.94E-90 dispersed
Cme04g00070 Cme-Chr4:523475 Cme07g00108 Cme-Chr7:673597 5.36E-19 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme07g00108 Cme-Chr7:673597 8.64E-145 dispersed
Cme06g00764 Cme-Chr6:5045134 Cme07g00108 Cme-Chr7:673597 2.01E-110 dispersed
Cme06g00963 Cme-Chr6:6843146 Cme07g00108 Cme-Chr7:673597 1.20E-43 dispersed
Cme07g00108 Cme-Chr7:673597 Cme11g02055 Cme-Chr11:28293377 1.06E-60 dispersed
Cme11g00886 Cme-Chr11:11904355 Cme07g00108 Cme-Chr7:673597 3.56E-18 dispersed
Cme12g00152 Cme-Chr12:1499830 Cme07g00108 Cme-Chr7:673597 5.35E-26 dispersed
Cme02g01555 Cme-Chr2:22582843 Cme07g00108 Cme-Chr7:673597 8.81E-57 transposed
Cme11g02478 Cme-Chr11:31423033 Cme07g00108 Cme-Chr7:673597 1.85E-33 transposed
Cme02g01081 Cme-Chr2:15840669 Cme07g00108 Cme-Chr7:673597 8.77E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g523 . . Bda01g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1730 . . . . . . . . Bhi09g02983 Tan01g3584 Cmetu02g1625 . Hepe01g1979 Mch11g0515 . . . . . . . . . . . Cme07g00108
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme10g00486 . 1 175 Response Regulator Gene Family AT1G59940 65.4 2.7e-56 216.1
Cme02g01933 . 10 159 Response Regulator Gene Family AT1G59940 62.9 5.1e-47 185.3
Cme09g01191 . 5 150 Response Regulator Gene Family AT1G59940 61.6 5.4e-41 165.2
Cme10g00486 . 16 185 Response Regulator Gene Family AT1G10470 66.5 1.9e-54 209.5
Cme02g01933 . 30 168 Response Regulator Gene Family AT1G10470 67.6 5.6e-46 181.4
Cme09g01191 . 5 155 Response Regulator Gene Family AT1G10470 57.7 1.0e-39 160.6
Cme08g01358 CCT 77 214 Response Regulator Gene Family AT1G10470 60.1 1.9e-38 156.4
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme02g01933 . 31 164 Response Regulator Gene Family AT5G62920 77.6 7.5e-51 197.2
Cme10g00486 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.1e-49 193.4
Cme09g01191 . 9 149 Response Regulator Gene Family AT5G62920 59.6 4.1e-41 164.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT5G62920 58.6 2.9e-39 158.7
Cme02g01933 . 30 163 Response Regulator Gene Family AT1G19050 75.4 5.4e-50 194.5
Cme10g00486 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.2e-44 176.8
Cme08g01358 CCT 75 216 Response Regulator Gene Family AT1G19050 56.3 9.5e-39 157.1
Cme09g01191 . 7 152 Response Regulator Gene Family AT1G19050 54.4 4.0e-37 151.8
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT2G41310 53.8 8.1e-60 227.3
Cme04g02093 CCT 1 181 Response Regulator Gene Family AT2G41310 63.5 5.6e-53 204.5
Cme09g01191 . 1 151 Response Regulator Gene Family AT2G41310 65.6 6.5e-49 191.0
Cme03g00540 . 12 160 Response Regulator Gene Family AT2G41310 60.7 2.8e-44 175.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.9e-41 165.6
Cme02g01933 . 29 160 Response Regulator Gene Family AT2G41310 62.6 5.0e-41 164.9
Cme10g00026 . 105 264 Response Regulator Gene Family AT2G41310 58.2 8.5e-41 164.1
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT3G57040 54.5 7.4e-64 240.7
Cme04g02093 CCT 1 179 Response Regulator Gene Family AT3G57040 66.5 6.9e-54 207.6
Cme09g01191 . 1 154 Response Regulator Gene Family AT3G57040 66.2 9.4e-51 197.2
Cme03g00540 . 19 189 Response Regulator Gene Family AT3G57040 55.7 7.7e-45 177.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.2e-43 172.2
Cme02g01933 . 26 160 Response Regulator Gene Family AT3G57040 61.8 1.4e-41 166.8
Cme10g00026 . 110 264 Response Regulator Gene Family AT3G57040 60.0 2.3e-41 166.0
Cme02g01933 . 25 183 Response Regulator Gene Family AT1G74890 69.9 1.2e-52 203.4
Cme10g00486 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.5e-47 185.7
Cme08g01358 CCT 75 209 Response Regulator Gene Family AT1G74890 60.0 4.3e-39 158.3
Cme09g01191 . 7 144 Response Regulator Gene Family AT1G74890 58.7 5.6e-39 157.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Cme02g01933 . 30 161 Response Regulator Gene Family AT2G40670 59.3 1.4e-37 152.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.9e-40 161.8
Cme02g01933 . 25 161 Response Regulator Gene Family AT3G56380 59.4 3.8e-40 161.4
Cme09g01191 . 11 152 Response Regulator Gene Family AT3G56380 57.3 4.6e-38 154.5
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme12g01975 . 6 555 Response Regulator Gene Family AT5G61380 51.2 8.5e-144 507.7
Cme08g02346 . 38 206 Response Regulator Gene Family AT5G60100 68.6 9.9e-56 214.5
Cme08g02346 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.9e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009381 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41593 PF00072 Response_reg 3.20E-23 CL0304 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00108 Cme_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.243103 0.0 0.0 0.0