Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00108 ATGACGGTTGAGCCTAGACTCGAAGACCCAGTTGACCAATTTCCCACTGGAATGCGTGTTCTTGCTGTTGACGATGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACTAATCAGGCTGTTATGGCACTCAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTCATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGTGATTACTTGTTGAAGCCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCAAAGGATCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAATCAGCAGATCTAAATGGGAAATTTAATAAAAAGAGGAAGGACCAGAACTATAATGAAGATGATGACCAGGACTATGGGCAAGATAATGATGACTCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTACATAGGAAGTTTGTAAATGCAGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTTGAAAAGCTCACACGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGGATCAGCTGTGTGGCAAACCAGCAAGCTAATATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTGGCGGAATTGGGAATTTCCACTCTTTGACTGGACCTCCACAGTTTCCAAACACTTCATATAGATCTATCCCAACCACTGGGATGTTCGGTCGATTGAATACGCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTGGGTAATTTGAGCAATTCTAGCAATGATCAGTCTACCTTTCATCCAATCGTGCTTTCTGGAAACCGCAGTGGGAATATTTTCCGTGGAATGCCTGAGCCATCAGAACTTGATCAACTCCAACATGTTAAGCATGGGACTCACGTGGACAATCTCTCTTCTGCTTTTGATGAACGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGGAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATTCCTCGATTCCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCAGTCTTCTATTGCGGTAGTATCTTCAAATTCAGATAGCTCACGTCCTTCATTAGATAATGTTAGATGCACTGGTGACAATTGGTCAAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCTGGCAACCTTTCTAATGTTGCTACTTCCTACCATGGGCAGTTGAGAGATAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATATCTTCTATAACTTCATTATCTACTCAGTCCCATGAATCGAGAATAGATTCTCAACGTCAAGCAGCTACAACTAGCAACAGATTTGATCAAATGATATCAAAGGTTCCTGTTCAGGATTGGAATGATCATAAAGAGGATGCCTATTACCACACAACTATGGCCTGTAGCTCGTCTAATTCTTTGATTCCAGTGAATGGTGCTGCAGAGACTTTGTCCAAGCGTTTGGAAAATCCTAATGCAATCTTCTCTGGTAGCAAGGATTTTAATGTGACTGCTCAAGCAAATGTTCTTGATCATGCAATGGTGGAACATGATCGACTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCCAGATTTTCATCGAGCAACTGTGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGAGTTTGGATGTGATAACTATCCCATTGGAACATGCATGTGA 2070 42.13 MTVEPRLEDPVDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEESADLNGKFNKKRKDQNYNEDDDQDYGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLGGIGNFHSLTGPPQFPNTSYRSIPTTGMFGRLNTPACMGMHGLSSPGTVQLGNLSNSSNDQSTFHPIVLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDNLSSAFDERTVFPASIGLPNGNMSSSTLSNPLLGLTNDSSIPEVQHHEVNGGRKFGTQSSIAVVSSNSDSSRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSGNLSNVATSYHGQLRDNTTSALHIGNCLSDISSITSLSTQSHESRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDAYYHTTMACSSSNSLIPVNGAAETLSKRLENPNAIFSGSKDFNVTAQANVLDHAMVEHDRLKKSTMETSLMLKQGYLYDHQQKMQSRFSSSNCGSLEDIACAMMKQEQDDGKLLEGEFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 673597 678483 + MELO3C016975.2.1 Cme07g00108 332124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00108 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Cme07g00108 689 Gene3D - 17 152 - -
Cme07g00108 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Cme07g00108 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Cme07g00108 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Cme07g00108 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Cme07g00108 689 MobiDBLite consensus disorder prediction 141 180 - -
Cme07g00108 689 Gene3D - 193 256 - -
Cme07g00108 689 CDD REC_typeB_ARR-like 20 134 - -
Cme07g00108 689 SUPERFAMILY CheY-like 16 142 IPR011006 -
Cme07g00108 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme07g00108 689 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cme07g00108 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cme07g00108 689 MobiDBLite consensus disorder prediction 141 196 - -
Cme07g00108 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 664 - -
Cme07g00108 689 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02198 Cme-Chr3:28932154 Cme07g00108 Cme-Chr7:673597 1.94E-90 dispersed
Cme04g00070 Cme-Chr4:523475 Cme07g00108 Cme-Chr7:673597 5.36E-19 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme07g00108 Cme-Chr7:673597 8.64E-145 dispersed
Cme06g00764 Cme-Chr6:5045134 Cme07g00108 Cme-Chr7:673597 2.01E-110 dispersed
Cme06g00963 Cme-Chr6:6843146 Cme07g00108 Cme-Chr7:673597 1.20E-43 dispersed
Cme07g00108 Cme-Chr7:673597 Cme11g02055 Cme-Chr11:28293377 1.06E-60 dispersed
Cme11g00886 Cme-Chr11:11904355 Cme07g00108 Cme-Chr7:673597 3.56E-18 dispersed
Cme12g00152 Cme-Chr12:1499830 Cme07g00108 Cme-Chr7:673597 5.35E-26 dispersed
Cme02g01555 Cme-Chr2:22582843 Cme07g00108 Cme-Chr7:673597 8.81E-57 transposed
Cme11g02478 Cme-Chr11:31423033 Cme07g00108 Cme-Chr7:673597 1.85E-33 transposed
Cme02g01081 Cme-Chr2:15840669 Cme07g00108 Cme-Chr7:673597 8.77E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41593 PF00072 Response_reg 3.20E-23 CL0304 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00108 - K14491 csv:101215220 1325.46