Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00110 ATGCTGAAGAAGATTATGTTGCCATTCGACCTGAATGGACGACAGTGGACCGGATTCTTGCTTGCAGGTTTATTATTTTCTTGGAGTTCTTTGCATAGGGGAAATGATGAAGAAAAAGAATATCTTGTGAAATATAAAGAACTTTCTTATGATGAATGTTATTGGGAATTTGAATCAGACATCTCTGCCTTTCAGCCTGAAATTGATAAGTTTCATAAAATTCAGTCTAAATCTCGCAAACAATCTTCGAATAAGAACAAAAGCAGCCATGTTGATATTGGTGAAGTAAAGAAAAAACAAAAAGAATTCCAACAATATGATTCTAGTCCTCAGTTTCTTTCTGGAGGAACATTACATCCATACCAGCTTGAAGGATTAAATTTCTTACGCTATTCTTGGTCCAAGCAAACTCATGTGATACTTGCTGATGAGATGGGGCTTGGAAAAACCATACAGAGTATTGCCTTTTTAGCATCCCTTTATGAAGAGAATCTAGCTCCCCACTTGGTAGTTGCTCCACTTTCAACTCTTCGAAATTGGGAACGTGAATTTGCTACCTGGGCTCCTCATATGAATGTTGTTATGTACGTGGGCACTGCACAAGCCCGTACGGTTATAAGGGAATATGAATTTTACTTTCCAAAGAATCATAAGAAGGTGAAGAAAAAGAAATCTGGCCAAATTGTTAGTGAAAGTAAGCAAGATAGAATCAAGTTTGATGTTCTGCTAACATCATATGAGATGATTAACTTTGATGTGGGAACACTGAAGCCTATAAAATGGCAATCCCTGATTGTTGATGAAGGCCACCGGCTTAAGAATAAGGATTCGAAATTATTTTCTTCCCAAATTTATATAGGGGGTAAATACCTCAATTTTTCTCACTGTTACTTTTTTGCATTTCAGAATAATCTTGATGAACTTTTCATGCTCATGCACTTCCTTGATGCGGGGAAGTTTGCAAGTCTGGAAGAGTTCCAGGAGGAGTTCAGAGATATTAATCAAGAGGAGCAAATCTTGAGGCTTCACAGAATGTTAGCTCCTCATCTCCTGAGAAGGGTCAAGAAAGATGTCATGAAGGACTTGCCCCCTAAAAAAGAACTTATTTTGCGTGTTGAACTAAGTAGTAAGCAGAAAGAATATTACAAAGCCATTTTAACCCGTAACTATCAACTATTAACTCGCCGTGGTGGTGCACAGATTTCTCTTATCAACGTTGTTATGGAATTGCGAAAGCTCTGCTGTCATGCCTACATGTTAGAAGGAGTTGAGCCAGATATAGAAGATCCTGAAGAAGCGTATAAACAGCTTTTGGAAACTTCCGGGAAGCTGCATTTGTTGGATAAGATGATGGTGAGACTTAAAGAACAAGGTCATAGAGTTCTCATATACACACAGTTTCAACACATGTTGGACTTGCTGGAAGATTATTGCAGTTACAAGAAATGGCAGTATGAAAGGATTGATGGCAAGGTTTGTGGAGCTGAAAGACAAATTCGAATAGACCGGTTTAATGCCAAGAATTCCTCTAGATTTTGTTTTCTGCTTTCTACTAGAGCTGGTGGTCTGGGAATAAATCTTGCGACTGCTGACACAGTTATCATATATGACAGTGATTGGAATCCCCATGCTGATCTACAGGCTATGGCTAGGGCACATCGGCTTGGGCAAACTAACAAGGTAATGATTTATAGACTAGTAACTCGAGGGACCATTGAAGAAAGGATGATGCAAATGACAAAGAAGAAGATGGTCTTAGAGCATTTGGTTGTGGGAAGGCTGAAGGCTCAAAACATTAATCAGGAAGAGCTAGATGATATTATAAGGTATGGCTCCAAGGAATTATTTGCTGATGAGAATGATGAGGCAGGAAAATCTCGTCAAATTCATTATGATGATGCTGCAATAGACAGACTACTGGACCGTGATCAAGTTAGAGACGAAGAAGCAACTGTTGATGACGAAGAGGATGATGAATTTTTGAAGGCGTTTAAGGTGGCAAATTTTGAATATATTGATGAGGTGGAGGCTGAAGAGGCAGCAAAAAGGGCATCCATGGAAAGTCAGCCTGTTGCAAGCAACGTGGAAAGAGCTACCTATTGGGAAGAGTTGTTGAAGGATAAATATGAAGTGCATAAGATAGAAGAGTTTAAAGCTTTGGGTAAAGGAAAGAGGAGCCGTAAGCAGATGGTATCTGTTGAAGAAGATGACCTAGCTGGACTCGAAGATGTAAGCTCCGAGGGTGAGGATGATAACTATGAAGCTGATTTGACTGACGGTGAAGCAAATTCTTCTGGTGTTCCTTCTGTGAAAAAGCCGTATCGGAGGAAATCTCGTGTGGATAGCACCGAGCCACTTCCCTTAATGGAAGGGGAAGGAAGATCATTTAGAGTTCTTGGTTTCAACCAAAATCAAAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGGGATTTTGACTGGAAGGAGTTCATTTCTCGGATGAAGCAGAAGACTTATGAAGAAATAAAGGAATACGGGACTCTTTTCTTATCTCACATTGCTGAAGATATCACTGAATCCCCCAACTTTTCAGATGGTGTTCCTAAAGAAGGACTCAGAATACAAGATGTGCTAATCAGAATTGCAGTTTTACTCTTGATAAGGGATAAAGCGAAAGTTGTCCCAGAAAATCCGAGTACTCCACTATTCACAGATGACATTTTATCTCGTTACCAAGGACTAAAAGGTGGAAAACATTGGAAGGAAGAGCACGATAGATTGTTGCTGCTTGCTGTTCTGAAGCATGGCTACGGTAGATGGCAAGCGATTATTGATGACAAGGACCTCAAGATTCAAGAGGTGATTTGTCAGGAATTGAATCTTCCCGTCATAAACCTACCTGTTCCTGGACAAACTGGTTCTCTAGTTCAGAATGGTGGAAACACACCAAACACTGAACCAGCTGGAAGTGAGTCTAGGGAAAAGGAAAATGGTGGTGGAAACGATCCTTCATCTGATGTGCAGGGAGGAGGAACTGATACTGCTAACCAATCTCAGTTGTATCAAGATTCATCTATATATTATCATTTTAGGGATATGCAGCGACGACAGGTTGAGTTCGTCAAGAAAAGGGTGCTTCTGTTGGAAAAAGGGCTGAACGCAGAGTACCAGAAAGAATACTTTGGTGACTCGAAAGCAAATGATATTACAAGTGAAGATATTGAGAATGAGTCCAAGGTTTCAAATTTGCCAGGTGCTAGCACTGTGGAGACCGATACTCAAAAGGCAGATCAGTTGCCTCAAGTGGATCCAATTTCTTCAAGGGAAACTTCTGCTGCTTGTGATGACAATCCCGATAGATTGGAATTAAGCCGGCTTTACAACGAGATGTGCAAGGTTGTGGATGAAAATTGTAGAGAGCTGGTGCATGCGCCTATTGGGAGCCACCATGCAGCTTCTGACCTGAAAAATAACCTTCTCCCTCTGGAGAAAATTATTGAAGACGTGGACCGAATTCTGTCTCCTCAGCCAAACCCCACTAAAGAACAATCGACATCAGATTCTGTTCGGCAACCTGCAGTTGTCGATTCACCGAGCACCGATGTTGGCCTTAAATCATCACTCACAAATCAAAATCCAGATAGTGAGAAGGCTGATGTTGCCACAAACATGGAGGTAGATCCCTCAACAGAATCTGAATCTCAAAAAGAAAGCAACAAGTCAATGCAGATAGACCTTGATCTGATTACCGAAGAGCCTGAACCATCGGCTAGTCATGTTCCAGCCTCTGAAGATCCAAATCCCAATCAACCAGAATCTGCAAGTCTACCGGAGAGAAGTAGGGTCGATGAAATGGAAGTAGAAGGGAGCAAGGAGATTGGCGCGGCAGAAGAACATAGCATTGAAGGCCCCAAGGCAGGGGTGATTGTGTTAGATGATTAG 3930 41.17 MLKKIMLPFDLNGRQWTGFLLAGLLFSWSSLHRGNDEEKEYLVKYKELSYDECYWEFESDISAFQPEIDKFHKIQSKSRKQSSNKNKSSHVDIGEVKKKQKEFQQYDSSPQFLSGGTLHPYQLEGLNFLRYSWSKQTHVILADEMGLGKTIQSIAFLASLYEENLAPHLVVAPLSTLRNWEREFATWAPHMNVVMYVGTAQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLIVDEGHRLKNKDSKLFSSQIYIGGKYLNFSHCYFFAFQNNLDELFMLMHFLDAGKFASLEEFQEEFRDINQEEQILRLHRMLAPHLLRRVKKDVMKDLPPKKELILRVELSSKQKEYYKAILTRNYQLLTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIEDPEEAYKQLLETSGKLHLLDKMMVRLKEQGHRVLIYTQFQHMLDLLEDYCSYKKWQYERIDGKVCGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDRDQVRDEEATVDDEEDDEFLKAFKVANFEYIDEVEAEEAAKRASMESQPVASNVERATYWEELLKDKYEVHKIEEFKALGKGKRSRKQMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGEANSSGVPSVKKPYRRKSRVDSTEPLPLMEGEGRSFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFISRMKQKTYEEIKEYGTLFLSHIAEDITESPNFSDGVPKEGLRIQDVLIRIAVLLLIRDKAKVVPENPSTPLFTDDILSRYQGLKGGKHWKEEHDRLLLLAVLKHGYGRWQAIIDDKDLKIQEVICQELNLPVINLPVPGQTGSLVQNGGNTPNTEPAGSESREKENGGGNDPSSDVQGGGTDTANQSQLYQDSSIYYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDSKANDITSEDIENESKVSNLPGASTVETDTQKADQLPQVDPISSRETSAACDDNPDRLELSRLYNEMCKVVDENCRELVHAPIGSHHAASDLKNNLLPLEKIIEDVDRILSPQPNPTKEQSTSDSVRQPAVVDSPSTDVGLKSSLTNQNPDSEKADVATNMEVDPSTESESQKESNKSMQIDLDLITEEPEPSASHVPASEDPNPNQPESASLPERSRVDEMEVEGSKEIGAAEEHSIEGPKAGVIVLDD 1309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 686726 701976 - MELO3C016973.2.1 Cme07g00110 332126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00110 1309 MobiDBLite consensus disorder prediction 736 757 - -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 1172 1214 - -
Cme07g00110 1309 Gene3D - 363 587 IPR027417 -
Cme07g00110 1309 Pfam Helicase conserved C-terminal domain 444 556 IPR001650 -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 1071 1112 - -
Cme07g00110 1309 Pfam CHD subfamily II, DUF1087 676 737 IPR009463 -
Cme07g00110 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 611 IPR027417 -
Cme07g00110 1309 SMART DUF1087_2 675 740 IPR009463 -
Cme07g00110 1309 Pfam CHD subfamily II, SANT-like domain 769 901 IPR009462 GO:0003677|GO:0006338
Cme07g00110 1309 SMART helicmild6 472 556 IPR001650 -
Cme07g00110 1309 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 40 1160 - -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 1072 1108 - -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 997 1014 - -
Cme07g00110 1309 Gene3D - 28 73 - -
Cme07g00110 1309 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 308 IPR014001 -
Cme07g00110 1309 CDD SF2_C_SNF 441 567 - -
Cme07g00110 1309 Gene3D - 110 362 IPR038718 -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 968 1014 - -
Cme07g00110 1309 SMART chromo_7 27 76 IPR000953 -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 736 786 - -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 968 984 - -
Cme07g00110 1309 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 446 607 IPR001650 -
Cme07g00110 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 353 IPR027417 -
Cme07g00110 1309 SMART DUF1086_2 745 904 IPR009462 GO:0003677|GO:0006338
Cme07g00110 1309 MobiDBLite consensus disorder prediction 1168 1309 - -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 1258 1272 - -
Cme07g00110 1309 SMART ultradead3 114 329 IPR014001 -
Cme07g00110 1309 Pfam SNF2-related domain 138 419 IPR000330 GO:0005524|GO:0140658
Cme07g00110 1309 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED 40 1160 - -
Cme07g00110 1309 Pfam Chromo (CHRromatin Organisation MOdifier) domain 33 73 IPR023780 -
Cme07g00110 1309 Gene3D - 871 1049 - -
Cme07g00110 1309 MobiDBLite consensus disorder prediction 1273 1295 - -
Cme07g00110 1309 SUPERFAMILY Chromo domain-like 32 76 IPR016197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00110 K11643 CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-] - csv:101214984 2367.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00187 Cme-Chr5:1286168 Cme07g00110 Cme-Chr7:686726 1.13E-157 dispersed
Cme07g00110 Cme-Chr7:686726 Cme08g00028 Cme-Chr8:224292 6.54E-165 dispersed
Cme10g00885 Cme-Chr10:6248440 Cme07g00110 Cme-Chr7:686726 1.20E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g02986 . . . . . . . . . . . . . . . . Cme07g00110
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009048 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41594 PF00176 SNF2_N 2.30E-49 CL0023 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00110 Cme_Chr07 FPKM 3.409836 2.865452 1.502643 0.476722 0.841779 0.86617 0.474046 0.188298 0.0 0.0