Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00112 ATGGCCAAGTGTCAAAGAAACGACGTTGGATCTGTAGTTTTTGACCGAGCTTCCACTTCCTCTCCCGCCGGCAGCCATTTCCGCCTATGCGCTCCCTTCTCCACCGCTTCATTCCGTAGGAAGATTTTTGACGCTGTTAGTTGTGGCGGAAGTTCCCGCTATAACTATCATCACGACGGCAATGTTGGTGGCGGCGATGGTACTGTTTCCACAGCCATTAGGTCTTTGTCCGAGATTGTGAAGGAAAGGGAGGCAGCAAGGCCGAAACGATCCAATGCGAAGTCGGAGAAGTTGTTCGATCTTCTTAAGTTGGAGTCGTCGCCAGAATCAAAACCGGAGACGAAGAAGAAGGAGGAGGTGCTGGAAGAGTTCAAAAGCGTGGTGAAGAAGTTGCAGGATGAGGATTTGGAGGAGAGGAGAGCGGCGGCGAGTGGAGTTAGGTTGCTTGCTAAAGAGGATGCAGAAGCGAGAGGAACGCTTGGAATGCTCGGAGCCATTCCGCCGCTGGTTGGAATGCTTGATTTGGAAGACGATGAATCTAAGATCGCTTCGCTTTATGCATTGCTTAATCTTGGAATTGGAAACGATTTGAACAAGGCAGCCATTGCTAAAGCGGGTACTGTTCACAAAATGCTCAAGCTGATCGAATCTGAAAGTTCCCCAAATCCACCGGTTTCAGAAGCCATAGTTGCAAATTTCCTTGGGTTGAGCGCTTTAGATACGAACAAACTGTTAATTGGCTCATCGGGTGCAATTCCATTCTTGGTAAAGAACTTATACGACCCACATCAAGAAAGCAGTTCACAAGTCAAGCAAGACGCTCTCCGTGCGCTTTATAACCTCTCTATTTCCCCATCCAATATTCCGTTCATCTTAGAAACCAAGTTGATCCCGTTTCTTCTAAACGCATTGGGAGATATGGAAATAAGTGAAAGAGCCCTCTCTATTCTAAGCAATGTAGTATCAACACCAGAAGGTCGTAAAGCCATAAGCACTTACCCAAATTCATTTCCAATACTAATTGATGTCTTGAATTGGGCTGATTCACCAGGCTGCCAAGAGAAGACATCCTACATTTTAATGGTAATGGCACACAAATCTTATAGTGATAGACAAGCAATGATTGAAGCTGGGATTTCATCAGCTTTGTTGGAACTAACTCTTTTGGGCAGTACATTGGCTCAAAAGAGGGCCTCGAGGGTTTTGGAGTCTTTGAGAGTTGATAAAGGGAAACAAATCTCGGATCATCTTGGAGGAAATTCTTCTGCTCCAATTTGTGGTTCTTTAACTTCTTTTACTAACCCAATTCTAGGGTCTGCTGAAGCTTTGGAAGGATCGGATGATTTGGTTAGTGAAGAGAAGAAAGCTGTGAAGCAATTGGTGAGGCAAAGTTTGCAAAACAATATGAGGAGAATTGTGAAGAGAGCCAATCTGCCTCAAGATTTTGTGCCTTCTGATCATTTCAAGTCGCTCACATCAAGTTCCACTTCAAAAAGCTTGCCATTTTGA 1509 44.86 MAKCQRNDVGSVVFDRASTSSPAGSHFRLCAPFSTASFRRKIFDAVSCGGSSRYNYHHDGNVGGGDGTVSTAIRSLSEIVKEREAARPKRSNAKSEKLFDLLKLESSPESKPETKKKEEVLEEFKSVVKKLQDEDLEERRAAASGVRLLAKEDAEARGTLGMLGAIPPLVGMLDLEDDESKIASLYALLNLGIGNDLNKAAIAKAGTVHKMLKLIESESSPNPPVSEAIVANFLGLSALDTNKLLIGSSGAIPFLVKNLYDPHQESSSQVKQDALRALYNLSISPSNIPFILETKLIPFLLNALGDMEISERALSILSNVVSTPEGRKAISTYPNSFPILIDVLNWADSPGCQEKTSYILMVMAHKSYSDRQAMIEAGISSALLELTLLGSTLAQKRASRVLESLRVDKGKQISDHLGGNSSAPICGSLTSFTNPILGSAEALEGSDDLVSEEKKAVKQLVRQSLQNNMRRIVKRANLPQDFVPSDHFKSLTSSSTSKSLPF 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 710653 717940 - MELO3C016971.2.1 Cme07g00112 332128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00112 502 SMART arm_5 367 407 IPR000225 GO:0005515
Cme07g00112 502 SMART arm_5 153 193 IPR000225 GO:0005515
Cme07g00112 502 SMART arm_5 239 283 IPR000225 GO:0005515
Cme07g00112 502 SMART arm_5 284 322 IPR000225 GO:0005515
Cme07g00112 502 SMART arm_5 195 238 IPR000225 GO:0005515
Cme07g00112 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 502 - -
Cme07g00112 502 Coils Coil 114 134 - -
Cme07g00112 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 250 287 IPR000225 GO:0005515
Cme07g00112 502 SUPERFAMILY ARM repeat 123 435 IPR016024 -
Cme07g00112 502 Gene3D - 121 407 IPR011989 -
Cme07g00112 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 502 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00112 - - - csv:101214500 884.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00112 Cme-Chr7:710653 Cme08g00227 Cme-Chr8:1525376 1.81E-40 dispersed
Cme09g00930 Cme-Chr9:12969489 Cme07g00112 Cme-Chr7:710653 3.60E-28 transposed
Cme03g01582 Cme-Chr3:24846632 Cme07g00112 Cme-Chr7:710653 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g514 . . Bda01g00768 . . . . . . . . . . . Sed11g1146 . . Bhi04g00043 Tan02g2758 Cmetu03g1431 . Hepe10g0221 . Lcy13g1826 . . . . . . . . . . . . . . . . . . Bda13g01245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00112
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001538 3 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 3 2 1 2 2 3 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00112 Cme_Chr07 FPKM 24.614576 23.996004 5.532764 5.774475 52.476521 52.556679 47.518192 0.467775 0.650546 0.414746