Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00115 ATGGACGAAGAACTGATAGCGAATTTTGTGTCAGCATACTTGAAGAAGAAGGGTTTCAAGGAAACGGAACAAGCTTTTCAGGAAGAGCTACGTCATAACAAGACTAATTGTTCTTCTCCATCTTCTCTCGTTGACATCGACGTCGCTAAGCACTTACTCTCCTTCTCCGAAGCAGAGAATATTCCAGCTAGATACCTTGAAGGATATAGCAAGCTTAGGTCCTGGGCTTATAACTCACTAGATTTGTACAAGCATGAGTTGCTTCGTGTGCTATACCCTGTGTTTATACATTGTTTCATGGATCTTGTGGCTAAAGGACATATTCAAGAAGCTCGAACCTTTTTCAATAGGTTCCGTGAAGACCATGAAATGATGCACCTACGAGATTTACAAAAGTTGGAAGGTGTACTATCTCCCTCTCATTTGGAGGAGATGGAATTTGCTCATTCTCTTAGGCAGGGAAAAGTCAATATAAAAATATGCCAGTACTCCTATGAGATGCTACTGCAATATCTTCATAAGACCCAAACCACAGTGATACTTGGGATTATCAATGAACGCATCAACTTCCAAGTTTTCCCTGGTCAGCCTAGCTCAATATCTGATGATGCGGAACTTGTGACACTCACGGGAAGCACCCAGGACACTGCTAATCAGATAAATAAAAAAGAAGTTCATTGGGGGTTACTCGAAGATTCTTTAGAAGAACGCTTGGAGAAAGCTGCTGGTTTGCTTTCAGATTCTGAAAAAGCAGAGGGAGAAACCAAGGATGGTGATGTAGATGAGAATAAGAAAAGAACAGCTGAGGGAGGAAAGCCAGGTGGTTCAATTAAAAAAGTCAAGAAGGACAAGACTGCCAGTGCAACTGGGAAAACTCTGAGGGCTGAAGCTAATTCAGCATCTATGGCACCACGAGTGAAGCCAGAGCTTGCTTTACCCATAATATCAACAGAGGTGGAACAATCTATTCTTGAAGACTTGAGGAACCGTGTGCAGTTGAGTTCCGTAGCTCTGCCATCAGTCAGCTTTTATACCTTCATTAATACACACAACGGTTTAAACTGTTCATCAATATCATATGATGGAGCTTTAGTTGCGGGTGGATTCTCAGACTCTTCTTTGAAGGTTTGGGACATGGCAAAGCTAGGACAACAAGCTGGAAATACTGTTTTGCAGGATGAAAACGATATGTCTACTAGTGATCCAGTGACAGGTCATACGAGTGGGAAGAGGCCTTATACATTATTTCAAGGTCATTCTGGGCCTGTTCACTCGGCCACTTTCAGTCCCATTGGGGACTTCGTTCTTTCATCCTCTGCAGACACAACTATTCGATTGTGGAGCACAAAACTAAATGCCAATCTTGTTTGCTACAAAGGTCATAATTACCCAGTATGGGATGTTCAGTTTAGTCCGGTTGGACATTATTTTGCTAGTTGCTCACATGATCGAACTGCAAGGATCTGGTCTATGGATAGAATTCAACCTTTAAGGATCATGGCAGGACATCTATCTGATGTGGATTGTGTTCAATGGCATGCCAACTGCAACTACATTGCAACTGGCTCGAGTGACAAAACTGTTAGATTGTGGGATGTCCAGAGTGGGGAATGTGTTCGAATTTTCATTGGCCACAGGAGCATGATTTTGTCGTTGGCAATGTCACCTGACGGTCGGTTCATGGCATCTGGTGATGAAGACGGTACGATTATGATGTGGGACCTATCAACGGGTCGCTGTGTTACACCTTTGATTGGACACACATCATGCGTTTGGACTCTTGCTTTCAGTTGTGAGGGGTCTCTCCTCGCCTCCGGTTCTGCCGACTGCACAGTGAAATTATGGGACGTAACTTCAAGCACCAAGCCACCAAGAACAGATGAAAACAAAACTGGAACTGCCAATAGACTTAGATCCTTGAAGACTCTACCAACCAAGTCGACTCCAGTTTACAGTTTGCGGTTCTCTCGGAGGAATCTCTTATTTGCAGCTGGGGCTCTCTCAAAAAGTGCATCAACTGCTTAA 2025 43.51 MDEELIANFVSAYLKKKGFKETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFSEAENIPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQGKVNIKICQYSYEMLLQYLHKTQTTVILGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENKKRTAEGGKPGGSIKKVKKDKTASATGKTLRAEANSASMAPRVKPELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTLFQGHSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEGSLLASGSADCTVKLWDVTSSTKPPRTDENKTGTANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSASTA 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 748282 755716 - MELO3C016968.2.1 Cme07g00115 332131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 499 IPR001680 GO:0005515
Cme07g00115 674 SUPERFAMILY WD40 repeat-like 340 668 IPR036322 GO:0005515
Cme07g00115 674 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 188 IPR007582 -
Cme07g00115 674 SMART WD40_4 409 448 IPR001680 GO:0005515
Cme07g00115 674 SMART WD40_4 577 616 IPR001680 GO:0005515
Cme07g00115 674 SMART WD40_4 339 378 IPR001680 GO:0005515
Cme07g00115 674 SMART WD40_4 535 574 IPR001680 GO:0005515
Cme07g00115 674 SMART WD40_4 493 532 IPR001680 GO:0005515
Cme07g00115 674 SMART WD40_4 451 490 IPR001680 GO:0005515
Cme07g00115 674 ProSitePatterns Trp-Asp (WD) repeats signature. 561 575 IPR019775 -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 579 - -
Cme07g00115 674 MobiDBLite consensus disorder prediction 243 289 - -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 448 - -
Cme07g00115 674 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Cme07g00115 674 MobiDBLite consensus disorder prediction 243 301 - -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 458 492 - -
Cme07g00115 674 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Cme07g00115 674 Pfam WD domain, G-beta repeat 416 448 IPR001680 GO:0005515
Cme07g00115 674 Pfam WD domain, G-beta repeat 455 490 IPR001680 GO:0005515
Cme07g00115 674 Pfam WD domain, G-beta repeat 578 616 IPR001680 GO:0005515
Cme07g00115 674 Pfam WD domain, G-beta repeat 536 574 IPR001680 GO:0005515
Cme07g00115 674 Pfam WD domain, G-beta repeat 495 532 IPR001680 GO:0005515
Cme07g00115 674 Pfam WD domain, G-beta repeat 348 378 IPR001680 GO:0005515
Cme07g00115 674 Gene3D - 497 575 IPR015943 GO:0005515
Cme07g00115 674 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Cme07g00115 674 Gene3D - 576 671 IPR015943 GO:0005515
Cme07g00115 674 CDD TAF5_NTD2 62 194 IPR007582 -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 537 - -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 448 IPR001680 GO:0005515
Cme07g00115 674 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 671 IPR037783 -
Cme07g00115 674 SUPERFAMILY Taf5 N-terminal domain-like 51 193 IPR037264 -
Cme07g00115 674 Gene3D - 276 496 IPR015943 GO:0005515
Cme07g00115 674 ProSitePatterns Trp-Asp (WD) repeats signature. 603 617 IPR019775 -
Cme07g00115 674 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Cme07g00115 674 PRINTS G protein beta WD-40 repeat signature 519 533 IPR020472 -
Cme07g00115 674 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 583 IPR001680 GO:0005515
Cme07g00115 674 Gene3D TFIID subunit TAF5, NTD2 domain 45 193 IPR037264 -
Cme07g00115 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 625 IPR001680 GO:0005515
Cme07g00115 674 PANTHER CANNONBALL-RELATED 1 671 - -
Cme07g00115 674 CDD WD40 416 666 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00115 K03130 TAF5; transcription initiation factor TFIID subunit 5 - csv:101214018 1339.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02071 Cme-Chr1:29531104 Cme07g00115 Cme-Chr7:748282 7.05E-08 dispersed
Cme02g00265 Cme-Chr2:2220781 Cme07g00115 Cme-Chr7:748282 2.26E-12 dispersed
Cme02g01705 Cme-Chr2:24115219 Cme07g00115 Cme-Chr7:748282 8.99E-13 dispersed
Cme04g00941 Cme-Chr4:12646236 Cme07g00115 Cme-Chr7:748282 4.82E-18 dispersed
Cme07g00115 Cme-Chr7:748282 Cme10g01609 Cme-Chr10:21336689 2.78E-27 dispersed
Cme08g00221 Cme-Chr8:1485911 Cme07g00115 Cme-Chr7:748282 5.44E-17 dispersed
Cme11g00345 Cme-Chr11:3588564 Cme07g00115 Cme-Chr7:748282 3.62E-07 dispersed
Cme11g01911 Cme-Chr11:27232054 Cme07g00115 Cme-Chr7:748282 8.29E-11 dispersed
Cme12g01065 Cme-Chr12:18526935 Cme07g00115 Cme-Chr7:748282 4.25E-07 dispersed
Cme12g01925 Cme-Chr12:25272751 Cme07g00115 Cme-Chr7:748282 5.36E-06 dispersed
Cme07g00115 Cme-Chr7:748282 Cme01g02671 Cme-Chr1:34161557 6.61E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g509 . . Bda01g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g0871 . . . . . . . . Bhi09g03000 Tan01g3572 Cmetu07g0650 . Hepe01g1970 Mch11g0508 . . . . . . . . . . . Cme07g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010521 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00115 Cme_Chr07 FPKM 222.069733 226.907333 227.139053 209.314514 253.687927 298.663422 239.114151 190.022903 187.387115 174.468613