Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00116 ATGGAGGAGAGGAATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAGTCTGGTGAAAGTGTTGCGATTAAGGTTTTGAATAAGGATCAGGTTAAGAAGGAAGGGATGATGGAGCAGATCAAGCGTGAGATCTCCGTTATGCGTCTTGTTCGTCATCCGAACATCGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGTGGTGGTGAGCTTTTTGCTAAAGTCGCTAGAGGAAAACTCAAAGAAGACGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCAGTCGATTACTGTCATAGTCGTGGAGTCTCTCACCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGATGGTCTTCTCCACACGCAGTGCGGTACTCCGGCCTACGTCGCACCGGAAGTACTAAGAAGAAAGGGATACGATGGAGCAAAAGCCGATATCTGGTCTTGTGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAGGTTTTCAAAGCCGAATTTGAATGTCCGCCATGGTTCTCGGCTGAATCGAAGCGTTTGATTTCAAAAATCCTCGTCGTAGATCCAGGCAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAACGAAAACAGAGGATTCCGATTCCGAAAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTCGAATTAATATCGTCGATGTCGTCTGGATTCGATCTCTCGAGTTTATTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGAGATGCTCGGTATCAACGATCATAGAAAAGATCGAGACGGTGGCGAAGAGACTAAGCTTCAAGGTATCGGAAGCGAAAGATTTCAAGCTCCGACTGCAAGGTCCATCGGAAGGGAGAAAAGGAAAGCTGTCTGTGACGGCGGAGGTGTTCGAAATAGCACCGGAAGTCGCCATAGTAGAATTCTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTTTGTGAGGAAGACGTTCGGCCGGCTCTGAAAGACATCGTTTGGACGTGGCAAGGTGATTGTGTCCCTAACACTGACGGACGTCACGGCCAATTTAACGGCGATGAATTTTTGTGA 1332 45.87 MEERNVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIATKTEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIIEKIETVAKRLSFKVSEAKDFKLRLQGPSEGRKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPNTDGRHGQFNGDEFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 765253 767045 + MELO3C016967.2.1 Cme07g00116 332132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00116 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00116 443 PANTHER - 1 432 - -
Cme07g00116 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 432 - -
Cme07g00116 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00116 443 SUPERFAMILY Protein kinase-like (PK-like) 7 292 IPR011009 -
Cme07g00116 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Cme07g00116 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Cme07g00116 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cme07g00116 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cme07g00116 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cme07g00116 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00116 443 CDD CIPK_C 302 416 - -
Cme07g00116 443 CDD STKc_SnRK3 10 264 - -
Cme07g00116 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cme07g00116 443 Pfam NAF domain 298 355 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01794 Cme-Chr2:24733430 Cme07g00116 Cme-Chr7:765253 6.13E-09 dispersed
Cme07g00116 Cme-Chr7:765253 Cme08g02122 Cme-Chr8:27131707 7.21E-180 dispersed
Cme02g00636 Cme-Chr2:7400308 Cme07g00116 Cme-Chr7:765253 1.85E-80 transposed
Cme04g01728 Cme-Chr4:24822090 Cme07g00116 Cme-Chr7:765253 0 transposed
Cme06g00242 Cme-Chr6:1452860 Cme07g00116 Cme-Chr7:765253 1.27E-57 transposed
Cme06g00683 Cme-Chr6:4446588 Cme07g00116 Cme-Chr7:765253 7.73E-29 transposed
Cme11g01793 Cme-Chr11:26095452 Cme07g00116 Cme-Chr7:765253 5.37E-39 transposed
Cme02g01072 Cme-Chr2:15744556 Cme07g00116 Cme-Chr7:765253 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64992 PF00069 Pkinase 2.70E-74 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00116 - - csv:101213773 851.277