Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00117 ATGATGGATATTTTTTTGGACCTTAATGTGGATCCTAATTCTTCTTATGCTAATTCTACTATGGATGAGGCTCATCATTCTTCACAGAAAAGAGATCAATTTGATGGAGAAATCTATGGAGTTCAAGAAAAACTCTCACTGAGCTTGTCAAATAAGGGAAGCGACTCGAGCCCGACATTAGAACAGGAGTTGGATAGAAAAATCCAAGAGAACGGGAAGCTAAGTCAGATGTTAAGAATAATGTATGAGAAATACATTAATCTTCAGAAACAAGTGATGTATTTGTTAAGCAACCAAAAGCAAAACACAGAAATGGAAGGGGTTTGTTCAAGGAAGAGAAAGGCAGAAGGAGACCAAGAAGATTATGAGAATTTAGAAGGAATTTGCAGCACAAGAGATGAAGATTTTAACAGGTGGCTTAAGAGGCCAAGATTAAATGGAAATTCAAAGGTTTCTAAAGTTTTTGTGCAAAAAGATGCATCAGATCCAAGCTTGGTTGTGAAAGATGGGTATCAATGGAGGAAGTATGGGCAAAAGGTTACAAGAGACAATCCTTCTCCAAGAGCTTACTTCAAATGCTCCTCTGCACCAAATTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTTTGGAAGATCCAACAATTTTGGTGGCAACTTACGAAGGAGAACACAGCCATGCTAGCCATTTCCAAACTGAGCTTTCTTTAAGGTCAATCAATGGCGGCAAAGGCAGCGCAGTCCCGGTCTTAGCGACGATCAAGCCGTCATGTGCCACCGTGACCCTCGATTTGATCCACGAAGACGGGCTGTTTAAGAGTCCGAAAGATTACGCGTCATCGGAGTCGGCCGAGGCAGCGGTTTGGCAGGAGTTTTTGGTACAACAAATGGCCTCTTCTTTAAAGAAGGATCCTGAATTTGCTGGCATTGTTGCTGGTGCCATTTCAGGCAAAGTTTTGGGAAACCAAACAAACAGAGAATAA 978 41.41 MMDIFLDLNVDPNSSYANSTMDEAHHSSQKRDQFDGEIYGVQEKLSLSLSNKGSDSSPTLEQELDRKIQENGKLSQMLRIMYEKYINLQKQVMYLLSNQKQNTEMEGVCSRKRKAEGDQEDYENLEGICSTRDEDFNRWLKRPRLNGNSKVSKVFVQKDASDPSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSSAPNCPVKKKVQRSLEDPTILVATYEGEHSHASHFQTELSLRSINGGKGSAVPVLATIKPSCATVTLDLIHEDGLFKSPKDYASSESAEAAVWQEFLVQQMASSLKKDPEFAGIVAGAISGKVLGNQTNRE 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 778340 781850 + MELO3C016966.2.1 Cme07g00117 332133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00117 325 SUPERFAMILY WRKY DNA-binding domain 165 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g00117 325 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 7 321 IPR044810 GO:0003700
Cme07g00117 325 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g00117 325 Gene3D WRKY domain 150 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme07g00117 325 Pfam WRKY DNA -binding domain 168 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme07g00117 325 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR-RELATED 7 321 - -
Cme07g00117 325 SMART WRKY_cls 167 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00117 - - - csv:101213537 626.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00117 Cme-Chr7:778340 Cme01g00436 Cme-Chr1:3169672 5.29E-22 dispersed
Cme04g01727 Cme-Chr4:24790872 Cme07g00117 Cme-Chr7:778340 4.30E-65 transposed
Cme03g01579 Cme-Chr3:24784408 Cme07g00117 Cme-Chr7:778340 1.04E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g507 . . . . . . . . . . . . . . Sed11g1143 . . Bhi04g00046 Tan02g2760 Cmetu03g1247 . Hepe10g0218 . Lcy13g1831 . . . . . . . . . . . . . . . . . . . . . . . Sed05g1739 . . . . . . . . Bhi09g03003 Tan01g3569 . . Hepe01g1969 Mch11g0506 . . . . . . . . . . . Cme07g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005027 2 3 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41595 PF03106 WRKY 2.20E-23 CL0274 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00117 Cme_Chr07 FPKM 10.850616 10.909842 6.208469 4.958821 29.204821 32.616714 29.804169 2.191729 2.138595 1.934639