Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00118 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCCGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGATACTGCAAATTCAGACCTTAACTCCCCAAAACATTCTGTGCGTCAAATTATGATTGGAAAGTTGGATAAACCAGTGAATGTATGTGCAGTTTTCGACTGCTGCTTTACAACGGAGGTGTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTGGGACAACTTCGTGAGAGTTTGACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGCATCATAGCCTCATTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTAGACAATATGAAGGCTGCCCTTTACTCACTATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTTTCACTTGGGCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGATATGATTTACAAGCAAGCACCACGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCAGAATGGCCTCCGCTTGACAGAGCCCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCGTTTATGGCTGCTGATCGAACTTCCAAAGTATTATTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTCCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATTTTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATTCTTCCGCTTCACTTATTTCAATTGAATTGCCAAATATTGAAGAGAAAGATGGTCTTCCAATTGAAGCCTTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAACGTGCTTCAGAAAATAACAGCTTCAAATTTGCTTCAAGAGAAACTGCTTAGTTCTGGCTCTTTAGACAAAAGGCAATTGCTTGACTTGTCTCTTGAAAAACTAATCTTGGAATCAGAGACATCTGAAGAAAATATTAGAAGTCCTCGATTGAAGATACAGACAAAGCATTCTAAGCCTTCTTCCGAATCATCTAAAGCTGCAAGTCCAGTGATATCAAAGATTGAACCCTCAGAATTGCAGGATGCTCTCCAACTACCACCTCAGTCTAAAATAATCACTCAACGAATACCTCAACTGCCATTGTCTACGCCAGTCTCCTTCCGTAATTCTGTGCAAGGTTCGCCTCGCCCTATACTGAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACATGATCATTCCGATTTTAGTGGTAAAGAACTTATACATTCAGGGACAACATCTTCACCATCATCTGCTCGGTTGAGTACAACTGCTCTAGATTCACCTAAAGATATTCAACGTAGTAAGCTTCCTATTTCTCCTCTCCCTCTAGTATTAGAGCCAAGATCTACATTAGAAAATTCTTCTACCACCGCATCAACTTCAACCATTCCTGATCCATTGTCCCTTCACCAACTTTCTTTGAAACCTATTAAATCTTTAGTTTCTCAACAGACCCAAACCGCATCACACGTGAGAAGTCAATTATCACCATCTTCATTACAACCAACTTCTACCTCTTATATTGGGAAATCCTCACCCTCTCTCAATGATAGCGAAGCTTCAAGATCATCTTCCTCTCCTTTGTTAAGATCATCTCCATCTTCTTGTACAAAAGAATTAAATTCCGTTTCCACTCCTCCTCCTCCTCCCCTCCCCCATTTTGATTCACCTTCAGCTTTAGCAACATCTCCACCTTCTAGTAGGACGAATGGTTCGATTTCCCCATCCTCACCACAACCGCCTTCTGCGACACAACTGTTATCTTCTAGCAAGGAAACAACTCAAACCGTTCCTCAATTTTCTTCAGTCACCTATAAACAACTTGACGAGTGTCTCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGTTGTAG 2343 41.49 MALFRKFFYRKPPDGLLEISERVYDTANSDLNSPKHSVRQIMIGKLDKPVNVCAVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGEHHSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDSSASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLLSSGSLDKRQLLDLSLEKLILESETSEENIRSPRLKIQTKHSKPSSESSKAASPVISKIEPSELQDALQLPPQSKIITQRIPQLPLSTPVSFRNSVQGSPRPILRYHSAPSALGITALLHDHSDFSGKELIHSGTTSSPSSARLSTTALDSPKDIQRSKLPISPLPLVLEPRSTLENSSTTASTSTIPDPLSLHQLSLKPIKSLVSQQTQTASHVRSQLSPSSLQPTSTSYIGKSSPSLNDSEASRSSSSPLLRSSPSSCTKELNSVSTPPPPPLPHFDSPSALATSPPSSRTNGSISPSSPQPPSATQLLSSSKETTQTVPQFSSVTYKQLDECLSPSSSSSSSSSSML 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 785333 795005 - MELO3C016965.2.1 Cme07g00118 332134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00118 780 Gene3D Protein tyrosine phosphatase superfamily 32 221 IPR029021 -
Cme07g00118 780 PANTHER FORMIN-J 1 24 - -
Cme07g00118 780 PANTHER FORMIN-J 54 457 - -
Cme07g00118 780 Gene3D - 226 371 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 639 696 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 460 485 - -
Cme07g00118 780 PANTHER - 1 24 - -
Cme07g00118 780 PANTHER - 54 457 - -
Cme07g00118 780 Pfam C2 domain of PTEN tumour-suppressor protein 230 367 IPR014020 -
Cme07g00118 780 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 231 368 IPR035892 -
Cme07g00118 780 SMART PTEN_C2_2 227 367 IPR014020 -
Cme07g00118 780 MobiDBLite consensus disorder prediction 639 780 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 560 588 - -
Cme07g00118 780 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 217 IPR029021 -
Cme07g00118 780 MobiDBLite consensus disorder prediction 560 583 - -
Cme07g00118 780 ProSiteProfiles C2 tensin-type domain profile. 229 368 IPR014020 -
Cme07g00118 780 MobiDBLite consensus disorder prediction 602 621 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 713 780 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 601 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00074 Cme-Chr1:521937 Cme07g00118 Cme-Chr7:785333 6.85E-07 dispersed
Cme02g01861 Cme-Chr2:25245447 Cme07g00118 Cme-Chr7:785333 0 dispersed
Cme07g00118 Cme-Chr7:785333 Cme12g01971 Cme-Chr12:25543931 5.13E-157 dispersed
Cme02g01069 Cme-Chr2:15699961 Cme07g00118 Cme-Chr7:785333 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00118 - - cmo:103493903 1321.99