Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00118 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCCGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGATACTGCAAATTCAGACCTTAACTCCCCAAAACATTCTGTGCGTCAAATTATGATTGGAAAGTTGGATAAACCAGTGAATGTATGTGCAGTTTTCGACTGCTGCTTTACAACGGAGGTGTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTGGGACAACTTCGTGAGAGTTTGACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGCATCATAGCCTCATTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTAGACAATATGAAGGCTGCCCTTTACTCACTATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTTTCACTTGGGCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGATATGATTTACAAGCAAGCACCACGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCAGAATGGCCTCCGCTTGACAGAGCCCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCGTTTATGGCTGCTGATCGAACTTCCAAAGTATTATTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTCCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATTTTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATTCTTCCGCTTCACTTATTTCAATTGAATTGCCAAATATTGAAGAGAAAGATGGTCTTCCAATTGAAGCCTTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAACGTGCTTCAGAAAATAACAGCTTCAAATTTGCTTCAAGAGAAACTGCTTAGTTCTGGCTCTTTAGACAAAAGGCAATTGCTTGACTTGTCTCTTGAAAAACTAATCTTGGAATCAGAGACATCTGAAGAAAATATTAGAAGTCCTCGATTGAAGATACAGACAAAGCATTCTAAGCCTTCTTCCGAATCATCTAAAGCTGCAAGTCCAGTGATATCAAAGATTGAACCCTCAGAATTGCAGGATGCTCTCCAACTACCACCTCAGTCTAAAATAATCACTCAACGAATACCTCAACTGCCATTGTCTACGCCAGTCTCCTTCCGTAATTCTGTGCAAGGTTCGCCTCGCCCTATACTGAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACATGATCATTCCGATTTTAGTGGTAAAGAACTTATACATTCAGGGACAACATCTTCACCATCATCTGCTCGGTTGAGTACAACTGCTCTAGATTCACCTAAAGATATTCAACGTAGTAAGCTTCCTATTTCTCCTCTCCCTCTAGTATTAGAGCCAAGATCTACATTAGAAAATTCTTCTACCACCGCATCAACTTCAACCATTCCTGATCCATTGTCCCTTCACCAACTTTCTTTGAAACCTATTAAATCTTTAGTTTCTCAACAGACCCAAACCGCATCACACGTGAGAAGTCAATTATCACCATCTTCATTACAACCAACTTCTACCTCTTATATTGGGAAATCCTCACCCTCTCTCAATGATAGCGAAGCTTCAAGATCATCTTCCTCTCCTTTGTTAAGATCATCTCCATCTTCTTGTACAAAAGAATTAAATTCCGTTTCCACTCCTCCTCCTCCTCCCCTCCCCCATTTTGATTCACCTTCAGCTTTAGCAACATCTCCACCTTCTAGTAGGACGAATGGTTCGATTTCCCCATCCTCACCACAACCGCCTTCTGCGACACAACTGTTATCTTCTAGCAAGGAAACAACTCAAACCGTTCCTCAATTTTCTTCAGTCACCTATAAACAACTTGACGAGTGTCTCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGTTGTAG 2343 41.49 MALFRKFFYRKPPDGLLEISERVYDTANSDLNSPKHSVRQIMIGKLDKPVNVCAVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGEHHSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDSSASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLLSSGSLDKRQLLDLSLEKLILESETSEENIRSPRLKIQTKHSKPSSESSKAASPVISKIEPSELQDALQLPPQSKIITQRIPQLPLSTPVSFRNSVQGSPRPILRYHSAPSALGITALLHDHSDFSGKELIHSGTTSSPSSARLSTTALDSPKDIQRSKLPISPLPLVLEPRSTLENSSTTASTSTIPDPLSLHQLSLKPIKSLVSQQTQTASHVRSQLSPSSLQPTSTSYIGKSSPSLNDSEASRSSSSPLLRSSPSSCTKELNSVSTPPPPPLPHFDSPSALATSPPSSRTNGSISPSSPQPPSATQLLSSSKETTQTVPQFSSVTYKQLDECLSPSSSSSSSSSSML 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 785333 795005 - MELO3C016965.2.1 Cme07g00118 332134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00118 780 Gene3D Protein tyrosine phosphatase superfamily 32 221 IPR029021 -
Cme07g00118 780 PANTHER FORMIN-J 1 24 - -
Cme07g00118 780 PANTHER FORMIN-J 54 457 - -
Cme07g00118 780 Gene3D - 226 371 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 639 696 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 460 485 - -
Cme07g00118 780 PANTHER - 1 24 - -
Cme07g00118 780 PANTHER - 54 457 - -
Cme07g00118 780 Pfam C2 domain of PTEN tumour-suppressor protein 230 367 IPR014020 -
Cme07g00118 780 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 231 368 IPR035892 -
Cme07g00118 780 SMART PTEN_C2_2 227 367 IPR014020 -
Cme07g00118 780 MobiDBLite consensus disorder prediction 639 780 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 560 588 - -
Cme07g00118 780 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 217 IPR029021 -
Cme07g00118 780 MobiDBLite consensus disorder prediction 560 583 - -
Cme07g00118 780 ProSiteProfiles C2 tensin-type domain profile. 229 368 IPR014020 -
Cme07g00118 780 MobiDBLite consensus disorder prediction 602 621 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 713 780 - -
Cme07g00118 780 MobiDBLite consensus disorder prediction 601 621 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00118 - - - cmo:103493903 1321.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00074 Cme-Chr1:521937 Cme07g00118 Cme-Chr7:785333 6.85E-07 dispersed
Cme02g01861 Cme-Chr2:25245447 Cme07g00118 Cme-Chr7:785333 0 dispersed
Cme07g00118 Cme-Chr7:785333 Cme12g01971 Cme-Chr12:25543931 5.13E-157 dispersed
Cme02g01069 Cme-Chr2:15699961 Cme07g00118 Cme-Chr7:785333 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g459 . Blo12g01081 Bda01g00738 . . Bpe02g00568 Bma04g00063 . . . Cma01g01497 . . . . . Cpe06g00347 . . . . . . . Cla05g01748 Cam05g1861 Cec05g1873 Cco05g1936 Clacu05g1852 Cmu05g1733 Cre05g1865 Cone4ag1800 Cone7ag1708 . . Lsi04g02141 Csa03g04345 Chy04g00357 . . . . . . Bpe04g00051 . . . Cmo01g01553 Cmo09g00475 Cma09g00468 . . . . Cpe02g00458 Bhi09g03004 . . . . . . . . . . . . . . . . Cme07g00118
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00118 Cme_Chr07 FPKM 0.0 0.0 0.274072 0.207756 0.0 0.0 0.0 0.0 0.0 0.0