Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00120 ATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCACAACAGGCCGGAACTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCATGGGCATGCTAAGTGTCACTTTGTTGGAATCGACATCTTCACTGGCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGACGTGCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATTTGAGACTTCCAACTGATGATAACCTGCTCAAACAGATTAAGGAGGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTTCCATGGGAGAGGAACAAATTTGTGCACTGAAGGATATCGGCCCAAAGTAG 480 46.67 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTDDNLLKQIKEGFAEGKDLVVSVMSSMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 806737 809272 + MELO3C016963.2.1 Cme07g00120 332136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00120 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cme07g00120 159 CDD S1_eIF5A 86 156 - -
Cme07g00120 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme07g00120 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme07g00120 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme07g00120 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme07g00120 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cme07g00120 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cme07g00120 159 MobiDBLite consensus disorder prediction 1 21 - -
Cme07g00120 159 Gene3D - 86 158 IPR012340 -
Cme07g00120 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme07g00120 159 Gene3D - 1 85 IPR014722 -
Cme07g00120 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01578 Cme07g00120 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00120 Cme-Chr7:806737 Cme10g00380 Cme-Chr10:2439524 1.78E-92 dispersed
Cme02g01059 Cme-Chr2:15557147 Cme07g00120 Cme-Chr7:806737 4.16E-110 transposed
Cme03g01578 Cme-Chr3:24781554 Cme07g00120 Cme-Chr7:806737 4.49E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00120 K03263 K02180 csv:101213295 321.242