Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00123 ATGGGGACATCAGGGACAAAGGACGATATAGAGATGAATAGCGAGGGGGAAGACTTATCACCTGGAATGGATTTGGATACAGATGATGATGATGATTATTATTCTGAGCCAGTCAACATAAATGATCTGGGGGAAGCATTTCTGAAGGATTTTTGTAAGAAGTCATCAATGGCATTTTTTAATCAGTACGGCCTTATCAGTCACCAAATCAACTCGTACAATGACTTCATAAAAAATGGTGTTCAGAAGGCCTTTGATTTTTTTGGTGACATTTTAGTTCAGCCAGGATATGACCCCTCTAAGAAAGGAGACGGGGAGTGGAGATATGCTTCAGTGAAGTTTGGTAAGGTGACCCTTGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATAAATATCAGTTTAGAGATATATACTCAAAAGTTAGTCAGCAGCGACAAATTTAAAACTGGAAAAGATCAATATGTCGACAAGGAACCTGTAGAAGGTGCCAGTGACAACAGGGATGTTTTTATCGGCAGACTACCTGTGATGGTGAATTCTGACCTCTGCTGGATGAAGGATGAGCAGAAACGTGACTGTGAATTTGATCGTGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTATTGCTCAAGAGCAAATTTGTTTGAGAAGACTCTGGATTTCTAATGTTCAAGGCTGGACTGTGGCATACAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGATCTAAAAAGCAAGGAGAAAGTCCTCAATGTTTATTTTTTGTCCACGGAAGTTCCTGTATGGATTTTATTCTTTGCACTTGGTGTTTCATCGGACAAAGAAATAGTAGATTTAATTGATTATGGCAGGGATGATCCGACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGACTTTCGAAGAGGTAAAAGAGCATTAACTTTTTTGGACAATGAAATTAGAAAGACCAGTTTCCCACCTGCTGAAAAAATTGAAGATTGTCTGAACCTGTATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAAAAGTGTCATTTCCTTGGTTATATGGTTAAATGTCTCCTGCAAGCCTATACTGGCCGTAGGAAATGTGACAATAGGGATGATTTTCGCAATAAGAGGTTTGAGTTGGCTGCAGAACTGCTTGAAAGAGAGCTTAAAGTACATATTGCACATGCACGTAGACGCATGGAAAAAGCTTTACAAAGGGACCTCTATGGGGATCGTCAAGTGCGTCCGATAGAACACTATTTGGATGCTTCCATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCGCATGCATTTAAGAGGATGGAAAGGATTTCAGGTGTGGTGGCTACTCTTGGTCGTGCTAATCCCTTACAGACAATGGCGGAGTTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTTGGGGATGCAAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTTCTCTCCACTCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCGGCACAGGACTTGTAAGCTTAAACACGACGAAACCGATAATTCCCACATTGTTTTGCTGTGGAATGGAGAATTTGGCGGACAATACATCTACTTCTCTTTGTGGGAAGTACAGAATTTTTCTTGATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTCACGAAAGTGAGACGCAAGCGACGAAGAAATCCGTTTCTGCATCAGGTAGAAGTCAAAAGAGATGAACAACTGAAAGAAGTACGTATATTTTCCGATGCTGGAAGGATATTACGTCCTCTCCTAGTCGTAGAGAACTTAAATAGGATTGACAAGTCTAAGGGAGAAAACTACACTTTTCAATCCCTTTTGGACAAGGGAATAATCGAACTTGTTGGAACTGAAGAAGAAGAAGACTGTCGTGTAGCTTGGAGTATTAAGCATCTTATGGAAGATGAAGGGACCACAAAATATTCCCATTGTGAACTTGATATGTCATTTTTATTAGGTTTGAGCTGCGGACTTGTCCCTTTTGCAAATCACGACCATGCCAGAAGGGCTCTGTTTCAATCCCAGAAGCACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTGGATACTTTATCCCACCAGTTACATTATCCACAAAGGCCACTTTTTCGTACAATGACTGCTGATTGCCTTGGAACACCTGGATACCTGTCATCTCACACCGGTATACTCCCCAAACCCGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCACCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACAGAGCCTCTCTTGAGCGTGGCATGTTTCGGTCTGAGCATACCCGGAGTTACAAGGCTGAGGTAGATAATAAAGAATCTTCAGAGAAGAGGAGAAAATCTGATGATACAATAAATTTTGGGAAGACTCAAAGTAAAATTGGAAGAGTTGACAGCTTAGATGACGATGGCTTCCCTTATATTGGCGCAAATTTGCAGAGTGGAGACATTGTCATTGGTAGATGTGCGGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACTGAGAAGGGCATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAACTATGCTGTTGTATCCCTCAGACAGGTTCGATCTCCTTGTCTTGGAGACAAGTTTTCAAGTATGCATGGACAAAAGGGAGTTCTGGGGTTTTTGGAGTCTCAAGAGAATTTCCCCTTCACCATCCAGGGGATAGTTCCAGATATTGTTATAAACCCACATGCTTTTCCTTCGCGACAGACTCCTGGTCAACTATTGGAAGCGGCTCTCGGGAAAGGCATCGCTGCTGGCGGTTCTCTGAAATACGCAACGCCTTTCTCAACTCCTTCTGTTGATGCCATTACCGACCAGCTTCACAGGGCGGGGTTTTCAAGATGGGGAAGCGAGAGAGTGTACAATGGCCGAACTGGTGAAATGATGCGATCTCTCATATTCATGGGTCCAACCTTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGCAACACCGGCCCTGTCCACCCTCTCACCCGACAACCTGTTGCTGACCGTAAGCGTTTTGGTGGGATCAAGTTTGGGGAGATGGAACGTGATTGTCTTATAGCCCATGGTGCCTCTGCCAACTTGCACGAACGTCTGTTTACCCTCAGCGACTCTTCCCAGATGCACGTTTGCCAGAAATGCAAGAATGTTGCTAGTGTGATTCAGCGATCAGTGGCTGGTGGTCGTAAGATAAGGGGTCCATATTGTCGGGTTTGTGAATCAGTCGATGATATTGTAAGGGTAAATGTACCCTATGGAGCCAAGTTGTTGTGCCAGGAGCTTTTCAGCATGGGTATCAATCTCAAGTTTGAAACACAACTTTGTTGA 3594 42.63 MGTSGTKDDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNINDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGVQKAFDFFGDILVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPAEKIEDCLNLYLFASLKGLKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVRPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTTKPIIPTLFCCGMENLADNTSTSLCGKYRIFLDGEWVGVCEDSLSFVTKVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELVGTEEEEDCRVAWSIKHLMEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHTRSYKAEVDNKESSEKRRKSDDTINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 817283 824799 + MELO3C016960.2.1 Cme07g00123 332139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00123 1197 Pfam RNA polymerase beta subunit 64 457 IPR007644 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 Gene3D RNA polymerase Rpb2, domain 2 248 409 IPR037034 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 Gene3D - 754 943 IPR014724 GO:0003899
Cme07g00123 1197 Gene3D - 724 1080 IPR037033 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 Pfam RNA polymerase Rpb2, domain 2 289 419 IPR007642 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 Pfam RNA polymerase Rpb2, domain 5 670 713 IPR007647 GO:0006351
Cme07g00123 1197 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 34 1194 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cme07g00123 1197 Pfam RNA polymerase Rpb2, domain 4 594 655 IPR007646 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 ProSitePatterns RNA polymerases beta chain signature. 947 959 IPR007121 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 Gene3D - 410 588 - -
Cme07g00123 1197 Gene3D - 57 240 - -
Cme07g00123 1197 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 50 1194 - -
Cme07g00123 1197 Pfam RNA polymerase Rpb2, domain 6 724 1094 IPR007120 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 MobiDBLite consensus disorder prediction 841 864 - -
Cme07g00123 1197 MobiDBLite consensus disorder prediction 1 31 - -
Cme07g00123 1197 Pfam RNA polymerase Rpb2, domain 3 498 555 IPR007645 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 Gene3D RNA polymerase alpha subunit dimerisation domain 1081 1195 - -
Cme07g00123 1197 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 34 1194 - -
Cme07g00123 1197 Pfam RNA polymerase Rpb2, domain 7 1096 1194 IPR007641 GO:0003677|GO:0003899|GO:0006351
Cme07g00123 1197 CDD RNA_pol_B_RPB2 65 1193 IPR015712 GO:0003899|GO:0006351|GO:0032549
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00123 - - K16252 csv:101212812 2352.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00123 Cme-Chr7:817283 Cme08g00301 Cme-Chr8:1920003 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00123 Cme_Chr07 FPKM 7.254726 8.216465 14.562951 11.591697 17.878544 22.485641 18.471016 18.023388 19.227831 15.641341