Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00135 ATGGGTAGCCAAACTATTCCAAGCCATGAGCGCTCCCGAACATATTGGACACCAGTAATGGAACGTTACTTTATTGATCTTATGTTGGAGCAGCTTCATAGGGGGAACAGGAGCGGGCACACTTTCAACAAGCAGGCATGGACAGACATGCTCACGATGTTCAATACAAAATTTGGATCTCAGTATGATAAAGATGTATTGAAGAGTCGGTATACAAATTTGTGGAAGCAATTCAACGATGTAAAAAATTTACTAGGTCATAGTGGTTTTTCCTGGGATGAAGGTCGACAAATGGTAATAGCCGATGACTATGTATGGGACATTTACATCAAGGCTCATCCAGATGCACGATCCTACAGAACTAAAGCAGTACTGAATTTTAGTGATTTATGCCTGATATATGGATACACTAATGCCGATGGAAGATACAGTCGATCAAGTCATGATATAGACTTTGACGAAGAAGTCCAAGCTGTAAGTACAGGTGATACCATGGGTTGCCCAGCACCTCCTGATCGTCCGAGGACAGATTGGACGCTAGAAATGGATCAGTATTTCATTGAACTTATGCTGGGTCAAATAGGAAGAGGCAATAAGACGTCTAATACATTCAATAAGCATGCATGGACTGAAATGCTTGCTCTGTTTAATGCTAAATTTGGTCCTCAACATGGTAAAAGGGTGTTAAGGCACCGATATAAGAAACTATGGAAATACTACAGTGATATTATGAATCTACTTCAACAAAATGGATTTTGCTGGGATGAAGTACAGCAAATGGTGGTTGCTGCTGATGATATTTGGGATGCTTATGTTAAGACGCACCCATTTGCACGAAGCTATAGAATGAAAGCCTTGCCAAACTACTATGACTTGGTTCTCATATATGGGAATGTAATTGATAATGAGAACCAGAATCATTTGGAACTAGATAAAAACCTTCAAGACCACATACCAGAGCTAAAAGATGCACGTGAATTTAGTCATATAATGAATAAACAATCTTCATCCATTGACTTCATAGACGTATTAAAAATTTATGCACCTACAGGAGAATCAAATGAGAATCAAATGGCAACTGTCAGTGATCGTACAAGAACATATTGGACGCCCCCAATGGATCGTTACCTCATAGACTTGCTATTAGAACAGGTGCATAGGGGCAATAAAATAGGTCAGACATTTGTTAGTCATGCTTGGATTGACATGGTTACTGCTTTTAATGCCCAATTCAGAGCTCAGCATGACAAGGATGTGCTGAAAAATCGATACAAACATTTGAGACGGTTGTATAATGAAATAAAGATTCTTCTCGAACAGAGAGGATTTTCGTGGGATGAAAACCGTGAAATTGTTACTGCTGATGATCATGTTTGGGATGCTTATACCAAGGATCACCCTGATGCCCGATCATACAGAGTTAAAACTGTACCAAGCTATCACAAGTTGTGTTTTATATTTGGTGAAGAAAGTTCTAACAGAAGATATAGCCGTTTGGCCCATGATACTCATCCCAGTAATGGGGTGCCTGTTCTGATGACTAATGAAAGGAAAAATGATGAAGTTCCTGCTGGACCTTTACCCATGATAGACTGGACACCACAGATGGATCGATCTTTTATTGATCTCATGCTCCAACAACTGCAAGAAGGAAATACCTTTGGCCAAGCATTTAGTGAGCAAGCATGGACTCGCATGATTATATCATTCAATGAGAGTTTCAAACTTCAATGTGACAGATATGTTCTAGAAGATCGTTATTTCTGGTGGATGAAGCAATACAGCGACATCTACAATCTTCTCAATCACAATGGGTTCGTGTGGAATGAATCTCAACAATTGATTACTGCTGAGGATAATCTCTGGGAAGCTTATGCAAAGGAGCATCCAGATGCCCTCTTGTACAAAGACAAATTCCTAGGCTACTATACCGATTTGTGCAAGATTTTTGGGAACATATTAGACAGAGGAGTCAACGGTCAGTGTACAGGTGAAATCGACAACGACAATTTGGAGATAAAGATGGATGGAAATGAACACCTACTACTGACATCAAGAGAGACTCAAATTTCTCAGAGAAAGCGTCCTGCAGACATGATATCATTGGACAGAGAGCTGTCAAAGAAAGTGCATAGAACCGAGAACGACGTGCAGAAAGCTATCTCCGAGATGGCAGGTGTAGTCTCTAAATTGGTGAACATGAAACAGCAACATAACTATAAAGCAGTAGAAGGCGCCATTGATGCTCTTCAAGCTATACCCGACATCGATGATGAACTAATGTTAGATGCTTGTGACCTATTAGAAGATGAAAGGAAGGCTAAAACATTTGTGGCTTTGGATGCAACCCTGCGAAAAAAGTGGTTACTGAGAAAGCTTCGTTTGCAATAG 2391 40.07 MGSQTIPSHERSRTYWTPVMERYFIDLMLEQLHRGNRSGHTFNKQAWTDMLTMFNTKFGSQYDKDVLKSRYTNLWKQFNDVKNLLGHSGFSWDEGRQMVIADDYVWDIYIKAHPDARSYRTKAVLNFSDLCLIYGYTNADGRYSRSSHDIDFDEEVQAVSTGDTMGCPAPPDRPRTDWTLEMDQYFIELMLGQIGRGNKTSNTFNKHAWTEMLALFNAKFGPQHGKRVLRHRYKKLWKYYSDIMNLLQQNGFCWDEVQQMVVAADDIWDAYVKTHPFARSYRMKALPNYYDLVLIYGNVIDNENQNHLELDKNLQDHIPELKDAREFSHIMNKQSSSIDFIDVLKIYAPTGESNENQMATVSDRTRTYWTPPMDRYLIDLLLEQVHRGNKIGQTFVSHAWIDMVTAFNAQFRAQHDKDVLKNRYKHLRRLYNEIKILLEQRGFSWDENREIVTADDHVWDAYTKDHPDARSYRVKTVPSYHKLCFIFGEESSNRRYSRLAHDTHPSNGVPVLMTNERKNDEVPAGPLPMIDWTPQMDRSFIDLMLQQLQEGNTFGQAFSEQAWTRMIISFNESFKLQCDRYVLEDRYFWWMKQYSDIYNLLNHNGFVWNESQQLITAEDNLWEAYAKEHPDALLYKDKFLGYYTDLCKIFGNILDRGVNGQCTGEIDNDNLEIKMDGNEHLLLTSRETQISQRKRPADMISLDRELSKKVHRTENDVQKAISEMAGVVSKLVNMKQQHNYKAVEGAIDALQAIPDIDDELMLDACDLLEDERKAKTFVALDATLRKKWLLRKLRLQ 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 881271 886370 - MELO3C016950.2.1 Cme07g00135 332151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00135 796 Pfam Myb/SANT-like DNA-binding domain 178 271 IPR024752 -
Cme07g00135 796 Pfam Myb/SANT-like DNA-binding domain 15 109 IPR024752 -
Cme07g00135 796 Pfam Myb/SANT-like DNA-binding domain 532 625 IPR024752 -
Cme07g00135 796 Pfam Myb/SANT-like DNA-binding domain 368 462 IPR024752 -
Cme07g00135 796 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 171 301 - -
Cme07g00135 796 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 683 794 - -
Cme07g00135 796 PANTHER EXPRESSED PROTEIN 1 163 - -
Cme07g00135 796 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 338 507 - -
Cme07g00135 796 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 530 670 - -
Cme07g00135 796 PANTHER EXPRESSED PROTEIN 171 301 - -
Cme07g00135 796 PANTHER EXPRESSED PROTEIN 683 794 - -
Cme07g00135 796 PANTHER EXPRESSED PROTEIN 338 507 - -
Cme07g00135 796 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 163 - -
Cme07g00135 796 PANTHER EXPRESSED PROTEIN 530 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00135 - - - csv:101212813 1499.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02230 Cme-Chr1:31008898 Cme07g00135 Cme-Chr7:881271 1.79E-40 dispersed
Cme02g00116 Cme-Chr2:883667 Cme07g00135 Cme-Chr7:881271 3.42E-25 dispersed
Cme03g01119 Cme-Chr3:20663795 Cme07g00135 Cme-Chr7:881271 2.96E-14 dispersed
Cme06g02294 Cme-Chr6:30199917 Cme07g00135 Cme-Chr7:881271 3.86E-14 dispersed
Cme07g00135 Cme-Chr7:881271 Cme03g01148 Cme-Chr3:20978174 4.92E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g595 . . . . Bpe02g01266 . . . . . . . Car09g00350 . . . Cpe06g00286 . . . . . . . Cla05g01667 Cam05g1782 Cec05g1788 Cco05g1847 Clacu05g1770 Cmu05g1655 Cre05g1784 Cone4ag1737 Cone7ag1657 Cone17ag0974 Cone20ag0315 . . . . . Blo18g00251 Bda01g01017 . . . . . . . Cmo09g00402 Cma09g00399 . . . . . Bhi09g03029 . . . . . . . . . . . . . . . . Cme07g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006000 1 7 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00135 Cme_Chr07 FPKM 0.0 0.0 0.0 0.848506 1.063215 1.609992 1.181688 2.269503 2.198323 1.940943