Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00147 ATGGCGTCTCTTCCTTCAATAATCCTTTTCTTCTTTGCTTTTTCTTTCCTTTTCTTTCAATCTTTCGCCGGAAAATTACTCTCGCCTGACTCCCACTACCTCACCGTCGAACTCGCCGACCTTTTCCCCTCCGCCTCCTGCACCCGCCGCTCCCCCCAAGCCCATACATCAAGTGTGGGAGAGCAGTCGTCACTGGAGGTGATTCACCGGCACGGCCCATGCGGCGACGATGTTTCAAACGCTCCGACGGCAGCCGAAATGTTCGTGCAAGATCAGGCTCGAGTGGATTTCATCCACTCCAAATTCGCAGGGGAGCTCGAATCCGTTGACCGTTTACGACCGTCGAAGGCCACAAAAATTCCGGCAAAGTCGGGGGCGACGATCGGGTCCGGCAACTACATAGTGAACGTGGGTCTGGGAACGCCGAAGAAATACTTGTCGCTTATATTTGACACCGGCAGCGATCTAACGTGGACTCAATGTCAGCCTTGTGCTAGATATTGCTACAACCAGAAAGACCCTGTTTTTGCCCCTTCTCAATCCACCACTTATTCCAATATTTCTTGTTCTTCGTCGGATTGCTCCCAGCTTGAATCAGGCACAGGGAACCAGCCTGGTTGCTCCGCCGCAAGAGCTTGCATTTACGGAATACAATACGGCGACCAATCTTTCTCTGTTGGATACTTCGCCAAAGAAACCCTAACCTTAACCTCCAATGACGTTATAGAAAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGACTCTTCGGTAGCGCCGCCGGTCTCATTGGCCTTGGCCAGGACAAAATCTCCATCGTTAAACAAACCGCACAAAAGTACGGTCAGATCTTCTCCTACTGCCTTCCTAAGACCTCCAGTTCCACCGGCTACTTAACCTTTGGCGGCGGCGGCGGCGGCGGCGCTCTTAAATACACGCCGATCACAAAAGCACACGGCGTCGCAAATTTTTACGGCTTAGACATCGTAGGCATAAAGGTTGGCGGAACTCAAATTCCGATTTCTTCGTCGGTATTCTCGACCTCGGGTGCGATCATCGATTCCGGTACGGTTATCACACGGCTGCCGCCGGATGCGTACAGTGCCTTGAAATCAGCGTTTCAGAAAGGAATGGCGAGGTATCCGAAGGCGCCGGAGCTTTCGATTTTGGACACGTGTTACGATTTGAGCAAATACTCCACTATACAGATCCCGAAAGTGGGGATTATGTTTAAAGGACAAGAAGAACTCGATTTGGATGGCACCGGAATCATGTACGGAGCATCAACGTCGCAGGTGTGTTTGGCGTTTGCAGGAAATCAAGATCCTAGCACCGTCGCCATTATCGGAAATGTGCAACAGAAGACTTTGCAAGTGGTTTACGATGTCGGTGGAGGAAAGATTGGGTTTGGTTACAATGGTTGTTAG 1428 50.91 MASLPSIILFFFAFSFLFFQSFAGKLLSPDSHYLTVELADLFPSASCTRRSPQAHTSSVGEQSSLEVIHRHGPCGDDVSNAPTAAEMFVQDQARVDFIHSKFAGELESVDRLRPSKATKIPAKSGATIGSGNYIVNVGLGTPKKYLSLIFDTGSDLTWTQCQPCARYCYNQKDPVFAPSQSTTYSNISCSSSDCSQLESGTGNQPGCSAARACIYGIQYGDQSFSVGYFAKETLTLTSNDVIENFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAQKYGQIFSYCLPKTSSSTGYLTFGGGGGGGALKYTPITKAHGVANFYGLDIVGIKVGGTQIPISSSVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMARYPKAPELSILDTCYDLSKYSTIQIPKVGIMFKGQEELDLDGTGIMYGASTSQVCLAFAGNQDPSTVAIIGNVQQKTLQVVYDVGGGKIGFGYNGC 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 940916 945756 + MELO3C016942.2.1 Cme07g00147 332163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00147 475 PRINTS Pepsin (A1) aspartic protease family signature 139 159 IPR001461 GO:0004190|GO:0006508
Cme07g00147 475 PRINTS Pepsin (A1) aspartic protease family signature 351 362 IPR001461 GO:0004190|GO:0006508
Cme07g00147 475 PRINTS Pepsin (A1) aspartic protease family signature 447 462 IPR001461 GO:0004190|GO:0006508
Cme07g00147 475 Pfam Xylanase inhibitor C-terminal 325 470 IPR032799 -
Cme07g00147 475 ProSiteProfiles Peptidase family A1 domain profile. 133 471 IPR033121 -
Cme07g00147 475 Pfam Xylanase inhibitor N-terminal 133 303 IPR032861 -
Cme07g00147 475 SUPERFAMILY Acid proteases 127 475 IPR021109 -
Cme07g00147 475 PANTHER ASPARTYL PROTEASE AED1 55 475 - -
Cme07g00147 475 Gene3D Acid Proteases 307 475 IPR021109 -
Cme07g00147 475 PANTHER ASPARTYL PROTEASES 55 475 IPR001461 GO:0004190|GO:0006508
Cme07g00147 475 CDD cnd41_like 132 475 IPR033873 -
Cme07g00147 475 Gene3D Acid Proteases 109 302 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00147 - - - csv:101215397 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00147 Cme-Chr7:940916 Cme10g00773 Cme-Chr10:5018924 3.74E-73 dispersed
Cme01g02535 Cme-Chr1:33308740 Cme07g00147 Cme-Chr7:940916 2.27E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00147 Cme_Chr07 FPKM 20.069674 24.120569 68.382828 73.57003 28.92317 28.613495 31.511841 124.461823 119.810379 118.103668