Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00150 | ATGGGCTATCTGAATTCCGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGTGGAGGATTAAGTCAGAATGGGAGGTTCAGCTACGGTTATGCTAGCTCTCCAGGGAAGAGATCTTCAATGGAAGATTTTTATGAGACACGAATTGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGATGGTCATGGCGGAGCACGAGCTGCCGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGCCATCCAAAGTTCATTTCAGACACCAAATCTGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTGAAGTCGGAAAATAATCAAAATAGAGATGCTGGATCAACTGCTTCCACCGCCATCCTAGTTGGTGACCGCTTGCTTGTTGCAAACGTTGGTGATTCTAGAGCTGTTATTTGCCGGGGTGGCACCGCCATTGCTGTCTCTCGGGACCATAAGCCTGACCAAACTGACGAGCGACGGCGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCACTTGAGTTTCTTATACTTGCAAGTGATGGACTGTGGGATGTCGTCTCTAATGAGGAAGCTGTCGCCATGACTAAACCAATTCAGGACCCCGAAGAGGCAGCAAAAAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGTGTCGTCGTTCGTTTCTTGGCAAATCAAGGAAGTCCCTCTCGCGGAACGTCTGGGTAA | 882 | 46.37 | MGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGRFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSRGTSG | 293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 961248 | 965541 | + | MELO3C016939.2.1 | Cme07g00150 | 332166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00150 | 293 | Pfam | Protein phosphatase 2C | 63 | 273 | IPR001932 | - | |
| Cme07g00150 | 293 | SMART | PP2C_SIG_2 | 45 | 280 | IPR001932 | - | |
| Cme07g00150 | 293 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 3 | 287 | - | - | |
| Cme07g00150 | 293 | SUPERFAMILY | PP2C-like | 28 | 280 | IPR036457 | - | |
| Cme07g00150 | 293 | Gene3D | - | 26 | 285 | IPR036457 | - | |
| Cme07g00150 | 293 | ProSitePatterns | PPM-type phosphatase domain signature. | 65 | 73 | IPR000222 | GO:0043169 | |
| Cme07g00150 | 293 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 287 | - | - | |
| Cme07g00150 | 293 | CDD | PP2Cc | 33 | 280 | IPR001932 | - | |
| Cme07g00150 | 293 | SMART | PP2C_4 | 24 | 278 | IPR001932 | - | |
| Cme07g00150 | 293 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 280 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g00427 | Cme-Chr3:5966702 | Cme07g00150 | Cme-Chr7:961248 | 6.90E-130 | dispersed | |
| Cme04g02121 | Cme-Chr4:28538023 | Cme07g00150 | Cme-Chr7:961248 | 7.53E-50 | dispersed | |
| Cme05g00265 | Cme-Chr5:1943982 | Cme07g00150 | Cme-Chr7:961248 | 2.33E-19 | dispersed | |
| Cme06g01081 | Cme-Chr6:8009167 | Cme07g00150 | Cme-Chr7:961248 | 4.44E-72 | dispersed | |
| Cme07g00150 | Cme-Chr7:961248 | Cme07g00584 | Cme-Chr7:5037343 | 1.51E-68 | dispersed | |
| Cme11g02106 | Cme-Chr11:28685305 | Cme07g00150 | Cme-Chr7:961248 | 3.73E-42 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00150 | K17506 | - | csv:101216117 | 578.556 |