Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00153 ATGGTCTGCGAGATGGAGAATGGTGTTATTGAAGATATGGACATTGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGACGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGTTCTTCACAACTACAATACCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCAGTGCGCCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCCATTTCTATTTTGGAAGAATCATGTGATATATGGCAAGATATTCCAACGAGGAAAACTGATTTCGTCTTTCAAAGCAAGAGAGTCGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCTGAGAAGCTCAAGGAAAACATAAAAAATATTGAAAAGCAGTCTTCACCAGTTGAGGAGTTGTCACAGATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCTGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTCGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGACTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATTCAGTTTGATACAGAGTTATTTGGGCTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTCCGTGAGGAGATTGCTGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCACCATTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACGACATCTGTTAGATGTTATGCTATCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGATCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTACAGACTGCTGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTCCCTATAGAGGTCATTGGAGATGTTCTTAGGATACGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCACAAGAAATCAACGGCTGATAACTTGACAGTTCCAGTAAATTCTTTGCAAGATGGAACATGTCTTCTAGCCTCTCAGAATGGCTTGTGTGGCCAAAAACACAGCGACAGAAATCATTTGCATTGTGATGGACCAGGCACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCGTGTTCATCCGAAACGACGGTATGGATACGCTGTGATGTGTATGACACAGGAATTGGAATACCAGAAAATGCGCTACCAACCCTTTTTAAGAGGTACATGCAAGCCAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGTTGGCAATATGCAAACAGCTGGTCGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCATACAAGGTTTCAAGCACCTGCAGTTCTGCGGACGATTCAGACGAGATCTCGGATGACGAATCTACAAACGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTACGCTATCATCTTCTAATGGATCCACAAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTAACTGAAGGTGAACCTTATCCTATTCCCTCAAACAACATCGATGTCGTAACCTCAAGCAAATCACAATGTTCATCAAGTCATGTAAACCCAAATCTTGATAACCAAAACCAACCAGAATCAAATGCTCGGTTGCAAAATGTGGGCGATGTGAATTCCCTGCCCAAATCAGAAACAACAAAGTTGGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACGGAACAGGGGAAAGAGAGATCCGAGGCAAGTAACCACTGCAGAAATAGCAGTAGTGGTCCTGAAGTAACATTGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAATCCATGATGAAGAAGTTCGGGCAAAAAATTGACGTTGTAACTAACGGCATTGAAGCTGTTCGAGCAGTTCAACGACGTTCTTACGATCTCATCCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAAGCAGCTGTAAACGCTGGAATAATTCACCACCCAACTACACCTTATTGGAATCCCACCTCATCCTCCCGCAACAGGATGCCCATCATCGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAACGGGATGGACTCGTTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTGCCACAACCACCTTTGTAA 2973 41.84 MVCEMENGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPTRKTDFVFQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNLTVPVNSLQDGTCLLASQNGLCGQKHSDRNHLHCDGPGTPSKSETTMNGNRENKSCSSETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSSTCSSADDSDEISDDESTNDEMTEGFFQFQPHSFSTLSSSNGSTRIPNSLLHTTGYPTSTKLNGLTEGEPYPIPSNNIDVVTSSKSQCSSSHVNPNLDNQNQPESNARLQNVGDVNSLPKSETTKLEDRLEKQSNKLQKTEQGKERSEASNHCRNSSSGPEVTLALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIIHHPTTPYWNPTSSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPPL 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 986984 997638 - MELO3C016937.2.1 Cme07g00153 332169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00153 990 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cme07g00153 990 Gene3D - 838 985 - -
Cme07g00153 990 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cme07g00153 990 Gene3D - 336 434 - -
Cme07g00153 990 MobiDBLite consensus disorder prediction 710 738 - -
Cme07g00153 990 ProSiteProfiles Response regulatory domain profile. 842 985 IPR001789 GO:0000160
Cme07g00153 990 Coils Coil 181 208 - -
Cme07g00153 990 Gene3D PAS domain 205 335 - -
Cme07g00153 990 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cme07g00153 990 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cme07g00153 990 Coils Coil 796 823 - -
Cme07g00153 990 Coils Coil 92 112 - -
Cme07g00153 990 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 986 - -
Cme07g00153 990 SUPERFAMILY CheY-like 841 986 IPR011006 -
Cme07g00153 990 Coils Coil 342 362 - -
Cme07g00153 990 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cme07g00153 990 SMART HKATPase_4 482 672 IPR003594 -
Cme07g00153 990 MobiDBLite consensus disorder prediction 794 824 - -
Cme07g00153 990 MobiDBLite consensus disorder prediction 749 793 - -
Cme07g00153 990 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cme07g00153 990 Pfam Response regulator receiver domain 843 910 IPR001789 GO:0000160
Cme07g00153 990 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cme07g00153 990 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cme07g00153 990 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cme07g00153 990 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 986 - -
Cme07g00153 990 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cme07g00153 990 SMART REC_2 841 981 IPR001789 GO:0000160
Cme07g00153 990 MobiDBLite consensus disorder prediction 710 834 - -
Cme07g00153 990 MobiDBLite consensus disorder prediction 572 587 - -
Cme07g00153 990 Gene3D - 435 677 IPR036890 -
Cme07g00153 990 MobiDBLite consensus disorder prediction 566 587 - -
Cme07g00153 990 CDD REC_hyHK_CKI1_RcsC-like 843 981 - -
Cme07g00153 990 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 672 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00153 Cme-Chr7:986984 Cme10g01141 Cme-Chr10:10840410 4.18E-61 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41596 PF02518 HATPase_c 9.40E-28 CL0025 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00153 - - csv:101219807 1861.27