Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00161 ATGATTATGGCTGCTTGGATTGCCAATTCTTCTAAAGCCCTAATCTCGAACGAGTACAATGCTAATCATTCTCGCTTTCTTCAGTTTTTTAACCTGAACGAACTCGCAAATTATCTATGCAGAAATAGTTTTGTGGAGTCGTGGTCATGGTCGCAAATCCGGTTGATGACAACCAGTAAACGCGTTCAGGATAGAAGCCGCTTTAAGAGAGTGCAGGATCTTGAAATGGCGACGGAGAAGTGGAAGGTAGCTCACAAGGTACTTTTCTTGATTGAAACTCTCAAGGAAGAGCCTGAGATGATAATTCCCGTTAGGGATTTAGAGCGATATCGTAGAAAAATTAATCTTCCGAAACCACATAGGATCTCAGAATTCATTCGAAAATCGCCTGAACTGTTTGAATTATACAAGGATCAGAGGGGTGTGTTGTGGTGTGGATTGACTAAACAAGCCGAAGATTTGGTGGAAGAGGAGAATAAGATAATTGAACAACACGCTGACAAAGTTGCCGAGTATGTTACCAGGTTTTTGATGATGTCAGTGAATAAGCGGCTTCCGGTGAACAAAATTGCTCATTTCAGAAGAGATTTTGGGCTTCCACTCGATTTTCGAGCAAAATGGGTGGAAAATTACCCTGAACTATTTAGGGTGGTGAAGTCTGAGGATGAATGTGAATATTTGGAGCTTGTTTCTTGGAATCCTGCTTGGGCTGTGACGGAGTTGGAGAAGAAGTTCATGGATGTGACTGAGAGCACTGCTACTCATACCCCAGGTTTGCTTTCACTTCCTTTTCCCATGAGATTTCCTTCCAATTACAAGAAGATGTATAGATATAGAGGGAAAATTGATCACTTTCAAAAAAGGTCTTATTTGTCTCCATATGCCGATGCAAGTGGGCTAAAAGCTGGTTCACTTGAATTTGATAAAAGGGCTATTGCTGTTATGCACGAGTTGCTTAGCTTTACCATGGAGAAGAGACTCGTTACTGATCACCTTACCCACTTTAGGCAGGAACTTGTGATGCCTCAAAAGCTAATGAGACTTCTTTTGAAGCATGTTGGGATATTTTATGTTTCAGAGAGGGGTAAAAGATTTAGTGTTTTCTTGACAGAAGCTTATGAAGGCCCGGAGTTGATTGATAAATGCCCTTTGGTTCTTTGGAAGGAGAAGGTATTGAGCCACGTTGGTTATAGAAGAAAGAAAAAGAAGATCGAAACTTTTAGTGACATGTCTGAAATGGAGGAGGATAACAATTTGGTTTTGGCTAAGGATGACTCTGAGCAGGATATGGAGGATACTGGTTGTTCAGAAGAGACATTAGATGCAAATACAGTTGACATGGAAACTAGGGATCTCCTTTTTGAGTAA 1368 40.86 MIMAAWIANSSKALISNEYNANHSRFLQFFNLNELANYLCRNSFVESWSWSQIRLMTTSKRVQDRSRFKRVQDLEMATEKWKVAHKVLFLIETLKEEPEMIIPVRDLERYRRKINLPKPHRISEFIRKSPELFELYKDQRGVLWCGLTKQAEDLVEEENKIIEQHADKVAEYVTRFLMMSVNKRLPVNKIAHFRRDFGLPLDFRAKWVENYPELFRVVKSEDECEYLELVSWNPAWAVTELEKKFMDVTESTATHTPGLLSLPFPMRFPSNYKKMYRYRGKIDHFQKRSYLSPYADASGLKAGSLEFDKRAIAVMHELLSFTMEKRLVTDHLTHFRQELVMPQKLMRLLLKHVGIFYVSERGKRFSVFLTEAYEGPELIDKCPLVLWKEKVLSHVGYRRKKKKIETFSDMSEMEEDNNLVLAKDDSEQDMEDTGCSEETLDANTVDMETRDLLFE 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1058797 1062817 - MELO3C016928.2.1 Cme07g00161 332177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00161 455 Pfam Plant organelle RNA recognition domain 69 398 IPR021099 GO:0003723
Cme07g00161 455 PANTHER EXPRESSED PROTEIN 44 439 - -
Cme07g00161 455 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 44 439 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00161 - - - csv:101219084 852.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00320 Cme-Chr3:4087798 Cme07g00161 Cme-Chr7:1058797 1.02E-45 dispersed
Cme04g00282 Cme-Chr4:2229480 Cme07g00161 Cme-Chr7:1058797 6.26E-48 dispersed
Cme07g00161 Cme-Chr7:1058797 Cme12g00649 Cme-Chr12:11963598 3.20E-45 dispersed
Cme07g01876 Cme-Chr7:24131540 Cme07g00161 Cme-Chr7:1058797 3.10E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g685 Blo01g01433 . Bda01g00646 . . Bpe02g00517 . . . . . . Car09g00329 . . . Cpe06g00269 . . . . . . . Cla05g01645 Cam05g1756 Cec05g1763 Cco05g1819 Clacu05g1745 Cmu05g1630 Cre05g1759 . . . . Lsi04g01371 . . . . . . . . . . . . . Cmo09g00381 Cma09g00379 . . . . . . . . . . . . . . . . . . . . . . Cme07g00161
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004384 1 3 3 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00161 Cme_Chr07 FPKM 3.778468 4.090976 6.865186 5.863901 7.634055 6.429167 7.021854 10.745558 11.599792 11.319781