Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00163 ATGCCCCTCACCAACGACGCCGCCCACTGCCGTCACCACTCATCTCAATTCCAAATACCTACTAACATCGGCGATGAAGACGATTTTCTTCCTTCTACCCAGACACTCCTCTCCACGCGGTCGCAAAAACCCCTCGCGACCTCCGACTTATCCCTCCACATTCCCACTATCAAGAGGCCGAGGCGTTCTACTCCGATGGCCACCGGTAAGGAAAATGTTCCCTCTATAACACATCGCGACGTTGGATTTAAGCGCCAAAAAAATGGCGCTGTTGCTTTGGATGATAGTGAGGTATTCGGAGCTTCGGATATTGATTTGGGTTGTAGTTTGGATTTGATACAGCCGAGCATTGTTGGCTGCAGTTACGAAACTCATGATGTAAACTCGGGAGAGGAGATAGTTGATGGGGATGATGATTTTTCTGGTGCGACCGATGAATGTAAAGGGTCGAAGGAAAAGGGGGGCTACCTGGTCAATTCGATTGAATCTAGGTTAGTGAATTCGAGAGTAGATTGTGATGTTGGGGTCAGTGGCAGTGGAGATGACAAGGTGAGCGGTGATGGTTTTGAGTCGGATACAGAGCTAGACTTGTTGCTCAATCTGCATTCAGAACTGGATGAGGAAGATGGTATTAATGGAGAGGGATTTGGAATAGAGGCAACAGATTTTCTGGTGGATGAAGAAGGTTTGATTCAATGTCCTCTTTGTGGGGTTGATATTTCTGATCTTAGTGACGAGCAACGTCTTGTTCATACCAATGATTGTATTGACAAAGTGGACGCCCAAGCTCAAAATGCTGCTCTCACCCATGATAAAAAGCAAACTTCAGGTTCTCGACAGTCTGATAATAATTCCAAATTTTCAACTGTTCTCAAATGGTTGCATGATCTTGATTTATCGAAATATGAAGACCTTTTTGTTAGGGAGGAGATCGATTGGGACACGTTACAGTGGTTGACAGATGAGGATCTCAATAATATGGGTATTACTGCACTTGGCCCCCGAAGGAAGATCACACATGCTCTCTCTGAACTCAGAAAAGAATCTTCTACGGTTGAAACTTCCACGAATTCACTTGCCTCTTCTAGTACTGGGCAACAGAGTAACAATGGTTCAGATGGGCGTGAAGGATCAACCAATGGAACTAATAAAACACCTCCGAATAAGTTGATCACAGATTATTTCCCAGGCTTTGCCACTAATAAAAATAATCCATGCGGCATCTCTAGTGGTCAGAAAGATGTGGGGAAAAAAATACCCGGTTCTCTTAACAAAGGTAAAACTGCAAAAAGAAATGTAAGAAATGGAAAGCTTGGGAATGTTCCAGTCTGGAGTTGTATACCAGGGACGCCATTTAGAGTGAAACCTATTCTTTACGCAGATTATCAAGGTTTGACGAAGTCATTTTGTCATGGAATGATTTATTGTTCACCTATAACAGCAAAGCTAGTAAACATGAAGATTGGAATTCCATGGGAAAGGTTACAAGTTTTACCTCTCGACCAAAAGATTAACATTGCGGGAGTAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCCAATGGTAAGGCTGTTTTACATACGGGGGATTTCCGATTTTGTGAGCAAATGGGAAGCTTGTCGGTTTTTCAAACATGTCGTATCCATACCCTGATCCTTGATACCACTTATTGTGATCCACAGTATGATTTTCCAAAGCAGGAGACCGTTATACAATTTGTAATTGATGCCATTCAAGCTGAAGCTTTCAACCCTAAAACTCTTTTCCTGATTGGATGTTATACAATCGGGAAGGAACGGCTTTTTCTGGAAGTTGCTCGTGTCCTGCGCAAGAAGGTCTATGTAACTGCGTCAAAGTTAAGGATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGAAGTGGTTTACAGTGAATGAGCGGGAAAGCCACATACATGTTGTACCTTTGTGGACACTTGCAAGCTTCAAACGACTGAAGCATGATCGATTCAGTCTTATAGTTGCTTTCTCTCCAACCGGCTGGGCGCTTTCAAAAGGAAAGAAGAAATCCCCTGGGAGAAGGTGGCAGCAAGGTACAATTATAAGATATGAAGTGCCATATAGTGAGCATAGCAGCTTCTCAGAACTCAAGGATTTTGTAAAGCTCGTATCTCCAGTAAACATAATACCAAGTGTGAATAATCATGGACCTGACTCGGCCCGTGCCATGACCTCGCTATTGTCATCTTGA 2262 43.28 MPLTNDAAHCRHHSSQFQIPTNIGDEDDFLPSTQTLLSTRSQKPLATSDLSLHIPTIKRPRRSTPMATGKENVPSITHRDVGFKRQKNGAVALDDSEVFGASDIDLGCSLDLIQPSIVGCSYETHDVNSGEEIVDGDDDFSGATDECKGSKEKGGYLVNSIESRLVNSRVDCDVGVSGSGDDKVSGDGFESDTELDLLLNLHSELDEEDGINGEGFGIEATDFLVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKVDAQAQNAALTHDKKQTSGSRQSDNNSKFSTVLKWLHDLDLSKYEDLFVREEIDWDTLQWLTDEDLNNMGITALGPRRKITHALSELRKESSTVETSTNSLASSSTGQQSNNGSDGREGSTNGTNKTPPNKLITDYFPGFATNKNNPCGISSGQKDVGKKIPGSLNKGKTAKRNVRNGKLGNVPVWSCIPGTPFRVKPILYADYQGLTKSFCHGMIYCSPITAKLVNMKIGIPWERLQVLPLDQKINIAGVDVTCFDANHCPGSIIILFEPPNGKAVLHTGDFRFCEQMGSLSVFQTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIGKERLFLEVARVLRKKVYVTASKLRILKCLGFSAEDMKWFTVNERESHIHVVPLWTLASFKRLKHDRFSLIVAFSPTGWALSKGKKKSPGRRWQQGTIIRYEVPYSEHSSFSELKDFVKLVSPVNIIPSVNNHGPDSARAMTSLLSS 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1072144 1079189 - MELO3C016926.2.1 Cme07g00163 332179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00163 753 Gene3D - 462 736 IPR036866 -
Cme07g00163 753 CDD SAM_superfamily 290 344 - -
Cme07g00163 753 ProSiteProfiles SAM domain profile. 285 348 IPR001660 GO:0005515
Cme07g00163 753 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 231 750 - -
Cme07g00163 753 Pfam SAM domain (Sterile alpha motif) 285 346 IPR001660 GO:0005515
Cme07g00163 753 MobiDBLite consensus disorder prediction 348 389 - -
Cme07g00163 753 CDD SNM1A-1C-like_MBL-fold 429 570 - -
Cme07g00163 753 SUPERFAMILY SAM/Pointed domain 285 347 IPR013761 -
Cme07g00163 753 Gene3D - 280 358 IPR013761 -
Cme07g00163 753 Gene3D - 573 714 - -
Cme07g00163 753 MobiDBLite consensus disorder prediction 406 429 - -
Cme07g00163 753 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 231 750 - -
Cme07g00163 753 MobiDBLite consensus disorder prediction 344 392 - -
Cme07g00163 753 SMART SAM_4 282 348 IPR001660 GO:0005515
Cme07g00163 753 SUPERFAMILY Metallo-hydrolase/oxidoreductase 465 736 IPR036866 -
Cme07g00163 753 Pfam DNA repair metallo-beta-lactamase 642 739 IPR011084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00163 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 1368.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00163 Cme-Chr7:1072144 Cme07g00981 Cme-Chr7:10729084 2.13E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00163 Cme_Chr07 FPKM 1.807716 2.209936 4.332832 3.778858 5.43517 6.228265 4.5967 4.63212 3.701637 3.632286