Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00169 ATGGGTATGAAGAGGAAGATGACGTGGAAATCGATGATCATTCCGAGCTGTTACACGGCCGTGCACCGCGGTTTATCGGAATCAGAGGACGACGAGCGACGGCGACTTTCAAAAAAAGGTTCATCGCAGCGGCTGTCGCTGTCGGACGCCAGTAATCCGAGTTCGCCGTTGTCGATCGACGACTTGTCGAATTCCCTTGTGGGACCGAAGCTTCATATTTTTTCATTTGCGGAACTTCGAACAATCACTCACAATTTCGCTTCCTCCAATTTGCTCGGTGAAGGTGGGTTCGGTCCGGTTTATAAAGGGTTCGTCGACAATAAAATTAAACCGGGTTTGGAAGCTCAGCCGGTCGCCGTTAAATTGCTCGACCTCGATGGATCTCAAGGACATAAAGAATGGCTGGCAGAGATCATAATTTTGGGGCAAATGAGGCATCAAAATTTGGTGAAACTAATCGGTTATTGTTGGGAAAAAGAATACAGACTTTTGGTTTATGAATATATGGCCAGAGGCAGTCTAGAAAATCAGCTATTTAGAAAGTACTCAGCAGCTTTGCCTTGGTCAACGAGGATGAAGATTGCTTTAGAAGCAGCCAAAGGCCTTCAATTTCTTCACGAAGCTGACCCACCAGTTATATTTAGAGATTTCAAAACCTCTAATATTCTCTTGGATTCTGATTATACAACAAAACTCTCGGATCTTGGATTGGCCAAAGATGGCGTTGATTGTGAAGATCAGCCAGACATGTCTTGTATTATGGGCACACAAGGCTATGCTGCTCCCGAGTACGTCAAATATGGCCATTTGACGACGATGAGTGACGTGTACAGCTACGGCGTCGTTTTACTAGAGCTGTTGACAGGAAAGCCATCAATGGACCGAAAGACCGGCGAGTTTCTAGTGGATTGGGCGAAGCCACTTTTAAAGGACTCGAAACGCCTCTGCCGGATCATGGACCCAAGGCTCGAGGGTCTATACTCGGCCGAAGGCGCACGTAAGGCCGCTGCCTTGGCCCATAGATGCTTGAACCGCAACCCTAAGCGGCGGCCGCCGGTGACAGAAGTCGTTAACGGTTTGAAGTCTTTGCAAGACTTTAACGACGTGTTCACGGCGCCGTTTGTCTACGTGGTGGAGGACTGCTGTGGGGAAGAGGCGAAGAAGGGGAAAGACGAGAGAGTGTTTGAAGGGAATGGGCTTGGGCTTGGTGGCTTGGGCCTGGGCTTGAATTGGAAAAATTGGAGGCCCATCTCTGTTTGA 1260 48.57 MGMKRKMTWKSMIIPSCYTAVHRGLSESEDDERRRLSKKGSSQRLSLSDASNPSSPLSIDDLSNSLVGPKLHIFSFAELRTITHNFASSNLLGEGGFGPVYKGFVDNKIKPGLEAQPVAVKLLDLDGSQGHKEWLAEIIILGQMRHQNLVKLIGYCWEKEYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDGVDCEDQPDMSCIMGTQGYAAPEYVKYGHLTTMSDVYSYGVVLLELLTGKPSMDRKTGEFLVDWAKPLLKDSKRLCRIMDPRLEGLYSAEGARKAAALAHRCLNRNPKRRPPVTEVVNGLKSLQDFNDVFTAPFVYVVEDCCGEEAKKGKDERVFEGNGLGLGGLGLGLNWKNWRPISV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1107017 1109222 - MELO3C016920.2.1 Cme07g00169 332185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00169 419 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 32 391 - -
Cme07g00169 419 Gene3D Transferase(Phosphotransferase) domain 1 169 372 - -
Cme07g00169 419 Pfam Protein kinase domain 88 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00169 419 MobiDBLite consensus disorder prediction 28 56 - -
Cme07g00169 419 MobiDBLite consensus disorder prediction 41 56 - -
Cme07g00169 419 SUPERFAMILY Protein kinase-like (PK-like) 64 359 IPR011009 -
Cme07g00169 419 Gene3D Phosphorylase Kinase; domain 1 60 168 - -
Cme07g00169 419 ProSiteProfiles Protein kinase domain profile. 86 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00169 419 PANTHER OS01G0588500 PROTEIN-RELATED 32 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00169 - - - csv:101218136 805.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02074 Cme-Chr5:28947038 Cme07g00169 Cme-Chr7:1107017 6.36E-162 dispersed
Cme07g00169 Cme-Chr7:1107017 Cme07g01508 Cme-Chr7:20975634 4.25E-125 dispersed
Cme01g02806 Cme-Chr1:35070277 Cme07g00169 Cme-Chr7:1107017 6.88E-140 wgd
Cme02g00304 Cme-Chr2:2513471 Cme07g00169 Cme-Chr7:1107017 6.93E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64993 PF00069 Pkinase 4.50E-46 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00169 Cme_Chr07 FPKM 6.350691 5.814749 4.557996 5.994804 4.836643 6.420851 6.258626 6.25391 7.221766 7.879226