Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00176 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGAAGAAGAAGAAGACGAAAGGGAAAGGGAAGAGGAAGTGAAGAAGGAAGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGTTTTTGAGAACCAGGATGATTCCGATCGCATTGTGCGAAATGGTGATGATTCTCAAGGGAGTAACCCACTTGCGAGTGCTGTTGATGATGTGCCTGAACGCCATGGCAGTGATCAACTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGGCGGCGATGGTGGCGCTCATTGTCATTGGGATGATGAGCTTCGCGGTGGTGGTGCTGGTGGTGGGGTTATTAATCCCTGGAATCTTTCTTTTGGAATTATGCATCAGTCTGAGGGAGGAGAGAGTAGTAGCGCCTCGGCTTTACCCTTGTCTTCTATGGCGGAGACTTCTATTGAGGAACGCGATCGGGATGCCCACCATAAGCGCGCCAAAGTTCACTCCAAATTCATTGAGAGCTCATTTGCAACTCCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGAGTTTGATTTTATTCATGGATCATCATCAATTATGTCAAGGAATGAATTTCTATACCATGCTTCTACATCAAGCAGAATTGATGCCGATAAAGATTTGGAATCTAGTTTTGGTAGAGATGATGGGATCAATGAGAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGGATGGATCTTACAGATGATTTGCTGCATATGGTTTTCTCCTTCTTGGATCACATCAATCTTTGCCGAGCTGCTATAGTTTGCAGGCAATGGCAAGCTGCTATTGAGGATATGTGTGGAAGATATCCAAATGCCACAGAAGTCAACATATCTGGTGTACCAGCTGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGAAATCTGGAGGTTCTAACTCTGGGACGAGGACAGCTGGCAGATAACTTTTTCCACGCCCTTGCTGATTGCCATTTGTTGAAGAGTCTGACTGTCAATGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCATGACAGACTGCGTCATCTTCATCTTACTAAATGCCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTATCCTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCCCTTCTTCGTGACCTGGATATAGGCTCTTGTCACAAGCTCTCAGATGCTGCAATTCGCTCGGCCGCAATTTCATGCCCGCAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTGAGTGATGAGACATTACGTGAAATTTCTGGAAGCTGCCCAAATCTTCAGCTTCTGAATGCATCATACTGCCCAAATATATCTCTGGAGTCCGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGAATCACATCAGCTTCAATGACTGCAATATCTAATAGTTCTAGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTGTCTGGATCTTCCTCATTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCGGACTTGAGTTTGCAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATTACTTCCAATTTACTTCAAGGGTTTAAAAGAACATTGCACTGTACTTTTGTGGACTTGCAGAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAGGATGTGGACCTCACAGATTGTGAATCTCTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGCGAGAGTTTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAGGTTTCTCTAGACGGCTGTGATCATCTTGAAAGAGCATCATTTTCCCCGGTGGGTCTGCGGTCTCTAAACCTGGGAATCTGTCCCAAATTGAACGAATTAAAACTTGAGGCCCCTCGTATGGATTTACTTGAGCTAAAAGGTTGTGGTGGATTGTCTGAGGCAGCCATCAATTGTCCTCGTCTAACATCATTGGATGCCTCCTTTTGTGGGTTAGTTTCCTATGATTATTTGGATGCAACCTTCTATTTGATGGAGATATTGGTTGCTTATGTCACTGAGTTCTTTTTTCCTTGCAGCCAACTGAAAGACGAGTGTTTGTCTGCCACGACTGCCTCATGTCCCCAGATTGAGTCATTAATACTGATGTCATGTCCATCTGTTGGTTCGGAGGGACTTTACTCTCTGCGATGCCTTCTGAAGTTGGTTGTGCTTGATTTATCATACACCTTTTTGATGAACTTGCAACCAGTTTTTGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCTTGTAAGTATTTAACTGACTCATCGCTGGAGCCTCTTTATAAGGAAGGCGCTCTTCCAGCTCTTCAAGAGTTAGATTTATCTTACGGGACACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACGCACTTGACTCATGTGAGCTTAAATGGGTGTGTGAACATGCACGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCATTGTCCGTCATCCCAATTCCTCTTGGTCAGGCCACTTTTGATGAGATCGAGGAACCAGTTGCACAGCCAAACCGTTTGCTACAGAACCTTAACTGTGTAGGTTGTCCGAATATCAGAAAGGTTCTCATTCCTCCAGCTGCACGTTGTTTTCATTTATCATCATTAAACCTATCACTGTCGTCGAATCTCAAGGAAGTTGACCCTCCAAGCAAACTGAAACCAACAGCAGGGGATAAATTGGACAAAAAATGGGGTCAAGACAGATTACAACTCACACGTCCACATTATAAGAACTTGGTCAATGACGGGTTGAATACCCACCTTGAACCCCCCCCCCCCCTCCGCCTCCGCATAGATCTCCTCAATTAG 3099 43.63 MTIWCCLCFTVGEEEEEEDEREREEEVKKEEGEMKPMMREEVFENQDDSDRIVRNGDDSQGSNPLASAVDDVPERHGSDQLRLFEDMVRAMHDGGDGGAHCHWDDELRGGGAGGGVINPWNLSFGIMHQSEGGESSSASALPLSSMAETSIEERDRDAHHKRAKVHSKFIESSFATPWPLGAGNPMREFDFIHGSSSIMSRNEFLYHASTSSRIDADKDLESSFGRDDGINENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAAIEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRNLEVLTLGRGQLADNFFHALADCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREISGSCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISNSSSLKVLELDNCSLLTSVCLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQGFKRTLHCTFVDLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGLVSYDYLDATFYLMEILVAYVTEFFFPCSQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMNLQPVFESCIQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSVIPIPLGQATFDEIEEPVAQPNRLLQNLNCVGCPNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDPPSKLKPTAGDKLDKKWGQDRLQLTRPHYKNLVNDGLNTHLEPPPPLRLRIDLLN 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1168552 1179064 - MELO3C016912.2.1 Cme07g00176 332192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00176 1032 Coils Coil 13 33 - -
Cme07g00176 1032 Gene3D Ribonuclease Inhibitor 469 536 IPR032675 -
Cme07g00176 1032 Pfam F-box domain 246 280 IPR001810 GO:0005515
Cme07g00176 1032 Gene3D - 245 282 - -
Cme07g00176 1032 PANTHER OS10G0396666 PROTEIN 149 977 IPR044703 GO:0010252|GO:1905393
Cme07g00176 1032 SMART LRR_CC_2 450 470 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 782 807 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 727 759 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 830 855 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 622 660 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 594 619 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 471 496 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 883 912 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 424 449 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 398 423 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 517 542 IPR006553 -
Cme07g00176 1032 SMART LRR_CC_2 664 694 IPR006553 -
Cme07g00176 1032 SUPERFAMILY L domain-like 327 702 - -
Cme07g00176 1032 Gene3D Ribonuclease Inhibitor 356 468 IPR032675 -
Cme07g00176 1032 Gene3D Ribonuclease Inhibitor 567 685 IPR032675 -
Cme07g00176 1032 MobiDBLite consensus disorder prediction 25 55 - -
Cme07g00176 1032 SUPERFAMILY F-box domain 245 302 IPR036047 GO:0005515
Cme07g00176 1032 MobiDBLite consensus disorder prediction 13 76 - -
Cme07g00176 1032 SMART fbox_2 247 288 IPR001810 GO:0005515
Cme07g00176 1032 PANTHER OS10G0396666 PROTEIN 149 977 - -
Cme07g00176 1032 Gene3D Ribonuclease Inhibitor 704 820 IPR032675 -
Cme07g00176 1032 Gene3D Ribonuclease Inhibitor 821 983 IPR032675 -
Cme07g00176 1032 SUPERFAMILY RNI-like 767 979 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00176 - - - cmo:103493700 1749.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00176 Cme-Chr7:1168552 Cme11g01949 Cme-Chr11:27546075 1.56E-08 dispersed
Cme07g00176 Cme-Chr7:1168552 Cme03g01616 Cme-Chr3:25052467 1.32E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00176 Cme_Chr07 FPKM 4.378717 5.289671 0.572941 0.341315 6.098653 6.821084 6.321959 0.320307 0.047353 0.299338