Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00180 ATGGAGGCTTCTCTATCAGGGGACTCAGGTTTCAGCTCAGAAGCAGGTCCCTCCCACTCCCACCCATCCGGACCTCACCGTTTTCCTCTTGCCGCTCAGCCGGAGATTATGCGAGCAGCCGAAAAGGACGATCAGTACGCCTCCTTTGTTTATGATGCTTGTCGCGACGCTTTTCGCCACCTCTTTGGCGCTCGGCTGGCCGTGGCATATCAGAGTGAGACAAAGCTTCTAGGACAAATGTTGTATTACGTGTTAACAACTGGGTCAGGACAGCAAACACTTGGTGAAGAATATTGTGATATCAATCAGGTCTCTGGACCTTATGGACTTTCTCCAAATCCAGCAAGACGTGCTCTTTTCATCGTATACCAGACAGCAGTCCCGTATATTGCTGAAAGAATTAGCTCTAGAGTAGCTTCTCGTGGCATCATGCTTGCTGATTCTCTGTCCGATGAGTTCTATGGAGAGACTGCATCAGGAGATGCATTGTCTCAATCTTTGTTAACCACGGAAATTCAACCTTCTTCAACCCCAGGGTCTGCTTCTTACATAAGGAGATTGAGGGCAAAAATTAGTCGATTATGGTTGCGAACAGTTCGATCCTGGCCTTCGGTGATTCCTAGTTATAGAGATTCAAATACTGTTATTGATGTTCATGATTGTATTATCATATATCCAAACGAGCTGCAGGCATTCGCTATGTGTTCATTGGAAAGCCATCTAATCAAAGACCCAGAGTGTAGCACCATAATGGCAATGGAGCCTCCACCGATTCTGAACCAATCCATGCATCTTCAACCAACCATTTTCCATGCGTTACATCCTGTTATATAG 834 46.04 MEASLSGDSGFSSEAGPSHSHPSGPHRFPLAAQPEIMRAAEKDDQYASFVYDACRDAFRHLFGARLAVAYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDINQVSGPYGLSPNPARRALFIVYQTAVPYIAERISSRVASRGIMLADSLSDEFYGETASGDALSQSLLTTEIQPSSTPGSASYIRRLRAKISRLWLRTVRSWPSVIPSYRDSNTVIDVHDCIIIYPNELQAFAMCSLESHLIKDPECSTIMAMEPPPILNQSMHLQPTIFHALHPVI 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1205933 1209333 + MELO3C016909.2.1 Cme07g00180 332196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00180 277 MobiDBLite consensus disorder prediction 1 19 - -
Cme07g00180 277 PANTHER PEROXISOME BIOGENESIS FACTOR 10 24 212 - -
Cme07g00180 277 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 24 212 - -
Cme07g00180 277 Pfam Pex2 / Pex12 amino terminal region 43 198 IPR006845 -
Cme07g00180 277 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00180 K13346 PEX10; peroxin-10 - csv:101214158 398.667
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g148 . . . . Bpe02g01557 . . . . . Cma01g01704 . Car09g00310 . . . Cpe06g00394 . . . . . . . Cla05g01808 . . . . . . . . Cone17ag0941 Cone20ag0284 Lsi04g01391 . . . . . Bda01g01345 . . . Bma01g00912 . . Cmo01g01807 Cmo09g00361 Cma09g00362 . Car01g01322 . . Cpe02g00287 Bhi09g02373 . . . . . . . . . . . . . . . . Cme07g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006593 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00180 Cme_Chr07 FPKM 16.391666 16.827177 13.929739 16.040316 25.818199 25.115456 23.74135 19.284735 18.153091 17.096687