Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00186 ATGGATGTGAACGGGAATAAACCTATTCGAAGAAGTTCGTCTCAGAAGGAGAGTGAAAATGGAGGTGAAGTTGTGGTTCAGCTTAGCGGCGTTGAAAATGAGTACTCTGTTCCGAAGCAAAACAGAGTCGATTCACAGACCAAAGAGCCGACCGGTTCGAGCGTTGGCTATGGCAACGCTTCACAACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCAATTTCAAATGGAACCCTCACGCCCAGAAGATCTCTGAGAAGATCAACTCTCTCCAAACCCAAATCCAGATTTGGGGAACAGCCAGGGTATATAGATTCAGACATGTTTGAGGAGGAGAATCATGTGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGCTCAAATCTCAACACGCCGAAGGCGCAACCTGAGGGAGAAGATGGTCGGAACATGGGGTTGAATGAAAAGCACAAGAAAGCGAAGGTGAAGACAGTGTTTAAGTGGATTGGAGTTTTTTGCATAATTAGTTGCTTGGTGGCTAGCTTGACTGTCAAGCCTTTGAAGAATCGGTTCCTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTTTGTGGATTGATATTTACTCGTTGGATTATGAATGTGGTTGTCTTTTTGATAGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTTACCCTTTGGTTGTCATTGGTTCTTGCTACATGGGGGTCCTTGTTCGATCGAAGAAACCATATGATTTCTAGTTCGAGGATCACTGCTAAGATTTTGGATGCTGTTACATGGACTTTGGCAAGCCTTCTTATAGGGGCATTCTTGTGGTTGATTAAAACGTTGTTGCTGAAAATACTGGCCTCCAAATTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCTCTTTTCCTTCATCATGTTCTACAAACCCTCTTGAGGCCTCCTCCAGTGGAGGATGAAAGTACTGCCAAGTTCAGGTGTTGTCGATTTTGTTTTGAGAGTAAAGAATCAGACCGTAAAAAGGTGATTGACATGGGAAAAATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCGGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGATGAAAGCTACAGAGATGTCGCCGATGGTGATATCACAAACGAGATGAATGTTGCCAAAGAAGCTGCTAAAGAGATCTTCAAAAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAGAGGGATCTTCTGGCATTCATGATCCCAGAAGAAGTTAACCTTGTGTGGCCACACTTTGAGGTAGATAAGACAAGGAAGATTGACATGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCCTTGAAAGACACTAAAACGGCAGTGAAGCAATTGAACAATTTAATAACTGCGCTTATTATAATAGTAACAGCTATTATTTGGCTCCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTGATGCATCCATTTGATGTCGGGGACCGATGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAATATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGTGACACCGTCGAATTTTCAATCGGTTTTGAAACACCAGTGGAGAGGATTGGGGCCATGAAGGAACAAATAAAGAGATATTTGGAGGAGAATCCACAACACTGGTATCCAAATCATAATGTGGTGGTGAAGGAGATCGAAAACGTGAATAAGATAAAGATCGCTCTTTATACAAACCACACCATGAATTTTCAAGACTGGGCTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATATTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAGTTGAGGGGCACTGA 2166 42.34 MDVNGNKPIRRSSSQKESENGGEVVVQLSGVENEYSVPKQNRVDSQTKEPTGSSVGYGNASQLAPTANKPPKIPISNGTLTPRRSLRRSTLSKPKSRFGEQPGYIDSDMFEEENHVSLREQIGATSSRSSNLNTPKAQPEGEDGRNMGLNEKHKKAKVKTVFKWIGVFCIISCLVASLTVKPLKNRFLWGLKVWKWCLLATVIFCGLIFTRWIMNVVVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLSLVLATWGSLFDRRNHMISSSRITAKILDAVTWTLASLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESLFLHHVLQTLLRPPPVEDESTAKFRCCRFCFESKESDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDDESYRDVADGDITNEMNVAKEAAKEIFKNVALPGNKFIEERDLLAFMIPEEVNLVWPHFEVDKTRKIDMKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLITALIIIVTAIIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFETPVERIGAMKEQIKRYLEENPQHWYPNHNVVVKEIENVNKIKIALYTNHTMNFQDWAEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGH 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1260419 1264569 - MELO3C016906.2.1 Cme07g00186 332202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00186 721 MobiDBLite consensus disorder prediction 1 104 - -
Cme07g00186 721 MobiDBLite consensus disorder prediction 123 137 - -
Cme07g00186 721 Pfam Mechanosensitive ion channel 499 705 IPR006685 GO:0016020|GO:0055085
Cme07g00186 721 MobiDBLite consensus disorder prediction 123 148 - -
Cme07g00186 721 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 20 715 - -
Cme07g00186 721 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 20 715 IPR016688 -
Cme07g00186 721 Gene3D - 559 608 IPR023408 -
Cme07g00186 721 PIRSF Memb_At2g17000 4 719 IPR016688 -
Cme07g00186 721 SUPERFAMILY Sm-like ribonucleoproteins 548 608 IPR010920 -
Cme07g00186 721 MobiDBLite consensus disorder prediction 33 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00283 Cme-Chr2:2367651 Cme07g00186 Cme-Chr7:1260419 0 dispersed
Cme05g00802 Cme-Chr5:10208879 Cme07g00186 Cme-Chr7:1260419 0 dispersed
Cme07g00186 Cme-Chr7:1260419 Cme11g01254 Cme-Chr11:19297825 1.23E-150 dispersed
Cme07g00182 Cme-Chr7:1211909 Cme07g00186 Cme-Chr7:1260419 0 proximal
Cme07g00186 Cme-Chr7:1260419 Cme07g00187 Cme-Chr7:1268851 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00186 K22048 - csv:101217197 1315.06