Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00186 ATGGATGTGAACGGGAATAAACCTATTCGAAGAAGTTCGTCTCAGAAGGAGAGTGAAAATGGAGGTGAAGTTGTGGTTCAGCTTAGCGGCGTTGAAAATGAGTACTCTGTTCCGAAGCAAAACAGAGTCGATTCACAGACCAAAGAGCCGACCGGTTCGAGCGTTGGCTATGGCAACGCTTCACAACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCAATTTCAAATGGAACCCTCACGCCCAGAAGATCTCTGAGAAGATCAACTCTCTCCAAACCCAAATCCAGATTTGGGGAACAGCCAGGGTATATAGATTCAGACATGTTTGAGGAGGAGAATCATGTGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGCTCAAATCTCAACACGCCGAAGGCGCAACCTGAGGGAGAAGATGGTCGGAACATGGGGTTGAATGAAAAGCACAAGAAAGCGAAGGTGAAGACAGTGTTTAAGTGGATTGGAGTTTTTTGCATAATTAGTTGCTTGGTGGCTAGCTTGACTGTCAAGCCTTTGAAGAATCGGTTCCTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTTTGTGGATTGATATTTACTCGTTGGATTATGAATGTGGTTGTCTTTTTGATAGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTTACCCTTTGGTTGTCATTGGTTCTTGCTACATGGGGGTCCTTGTTCGATCGAAGAAACCATATGATTTCTAGTTCGAGGATCACTGCTAAGATTTTGGATGCTGTTACATGGACTTTGGCAAGCCTTCTTATAGGGGCATTCTTGTGGTTGATTAAAACGTTGTTGCTGAAAATACTGGCCTCCAAATTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCTCTTTTCCTTCATCATGTTCTACAAACCCTCTTGAGGCCTCCTCCAGTGGAGGATGAAAGTACTGCCAAGTTCAGGTGTTGTCGATTTTGTTTTGAGAGTAAAGAATCAGACCGTAAAAAGGTGATTGACATGGGAAAAATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCGGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGATGAAAGCTACAGAGATGTCGCCGATGGTGATATCACAAACGAGATGAATGTTGCCAAAGAAGCTGCTAAAGAGATCTTCAAAAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAGAGGGATCTTCTGGCATTCATGATCCCAGAAGAAGTTAACCTTGTGTGGCCACACTTTGAGGTAGATAAGACAAGGAAGATTGACATGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCCTTGAAAGACACTAAAACGGCAGTGAAGCAATTGAACAATTTAATAACTGCGCTTATTATAATAGTAACAGCTATTATTTGGCTCCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTGATGCATCCATTTGATGTCGGGGACCGATGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAATATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGTGACACCGTCGAATTTTCAATCGGTTTTGAAACACCAGTGGAGAGGATTGGGGCCATGAAGGAACAAATAAAGAGATATTTGGAGGAGAATCCACAACACTGGTATCCAAATCATAATGTGGTGGTGAAGGAGATCGAAAACGTGAATAAGATAAAGATCGCTCTTTATACAAACCACACCATGAATTTTCAAGACTGGGCTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATATTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAGTTGAGGGGCACTGA 2166 42.34 MDVNGNKPIRRSSSQKESENGGEVVVQLSGVENEYSVPKQNRVDSQTKEPTGSSVGYGNASQLAPTANKPPKIPISNGTLTPRRSLRRSTLSKPKSRFGEQPGYIDSDMFEEENHVSLREQIGATSSRSSNLNTPKAQPEGEDGRNMGLNEKHKKAKVKTVFKWIGVFCIISCLVASLTVKPLKNRFLWGLKVWKWCLLATVIFCGLIFTRWIMNVVVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLSLVLATWGSLFDRRNHMISSSRITAKILDAVTWTLASLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESLFLHHVLQTLLRPPPVEDESTAKFRCCRFCFESKESDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDDESYRDVADGDITNEMNVAKEAAKEIFKNVALPGNKFIEERDLLAFMIPEEVNLVWPHFEVDKTRKIDMKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLITALIIIVTAIIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFETPVERIGAMKEQIKRYLEENPQHWYPNHNVVVKEIENVNKIKIALYTNHTMNFQDWAEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGH 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1260419 1264569 - MELO3C016906.2.1 Cme07g00186 332202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00186 721 MobiDBLite consensus disorder prediction 1 104 - -
Cme07g00186 721 MobiDBLite consensus disorder prediction 123 137 - -
Cme07g00186 721 Pfam Mechanosensitive ion channel 499 705 IPR006685 GO:0016020|GO:0055085
Cme07g00186 721 MobiDBLite consensus disorder prediction 123 148 - -
Cme07g00186 721 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 20 715 - -
Cme07g00186 721 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 20 715 IPR016688 -
Cme07g00186 721 Gene3D - 559 608 IPR023408 -
Cme07g00186 721 PIRSF Memb_At2g17000 4 719 IPR016688 -
Cme07g00186 721 SUPERFAMILY Sm-like ribonucleoproteins 548 608 IPR010920 -
Cme07g00186 721 MobiDBLite consensus disorder prediction 33 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00186 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101217197 1315.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00283 Cme-Chr2:2367651 Cme07g00186 Cme-Chr7:1260419 0 dispersed
Cme05g00802 Cme-Chr5:10208879 Cme07g00186 Cme-Chr7:1260419 0 dispersed
Cme07g00186 Cme-Chr7:1260419 Cme11g01254 Cme-Chr11:19297825 1.23E-150 dispersed
Cme07g00182 Cme-Chr7:1211909 Cme07g00186 Cme-Chr7:1260419 0 proximal
Cme07g00186 Cme-Chr7:1260419 Cme07g00187 Cme-Chr7:1268851 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00164 . 129 520 Mechanosensitive Ion Channel Family AT4G00290 65.8 9.0e-152 533.9
Cme03g01806 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.4 7.2e-197 684.1
Cme06g02224 . 18 635 Mechanosensitive Ion Channel Family AT5G10490 55.3 2.2e-169 592.8
Cme03g01806 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.4 7.3e-197 684.1
Cme06g02224 . 37 417 Mechanosensitive Ion Channel Family AT1G58200 69.0 3.0e-150 529.3
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT1G53470 55.4 3.9e-259 891.3
Cme01g01219 . 84 951 Mechanosensitive Ion Channel Family AT1G53470 50.4 1.2e-236 816.6
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT3G14810 52.8 5.6e-247 850.9
Cme11g01254 . 43 918 Mechanosensitive Ion Channel Family AT1G78610 59.2 1.5e-279 959.1
Cme01g01219 . 52 951 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.8e-272 935.6
Cme11g01254 . 217 927 Mechanosensitive Ion Channel Family AT2G17000 60.7 2.6e-236 815.5
Cme01g01219 . 266 939 Mechanosensitive Ion Channel Family AT2G17000 58.0 1.9e-218 756.1
Cme02g00283 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 2.8e-194 675.6
Cme07g00186 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.3 4.3e-187 651.7
Cme07g00187 . 81 730 Mechanosensitive Ion Channel Family AT5G12080 52.6 2.0e-176 616.3
Cme07g00182 . 68 703 Mechanosensitive Ion Channel Family AT5G12080 52.6 1.6e-173 606.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00186 Cme_Chr07 FPKM 18.784056 19.855522 16.891182 16.558304 21.056366 21.877792 21.108513 25.085379 23.645348 23.759426