Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00187 ATGGATGTGAACGGCAACAAACCTATGAAAGTCGTTCGAAGAAGTTCGTCTCAGAAGGAAGGTGAAAATGCAGGCCAAGTTGTGGTTGATATTAGCACTAGCAGCGTTGTGTTTCCGAAAGAAACCAGAGATGAAAATAACTACTCTGTACTGAACCAAAACAGAGTCGATTCACAGAACAAAGAGTCGACTGGTTCGAGCATTGACCATGGCTACGATTCACATCGTCCTCCCACTGCTAATCAGCCCTTGAAAATTCCCAGTTCAAATAGACCCCCCATGCCCAGAAGATCTCTCAAAAGATCAATTCTATCGAGACCCAAATCCAGATTTGGGGAACAGCCACGTCACATCGATTCAGAAGATATGTTTGAGGAGAATCATGAGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAACCTCTGCTCCTAACACCCCGAAGGCTCAACCTGAGGAAGAAGATGAAGAGGATATCGTTAAGACAGAGCAGTTGAACAAAAAGCACAAGAAATGGAAGGTGAAGACAATGATTAAGTGGGTTGTAGTTTTTTGCCCAACTGGATGCTTGGTGGCTAGCTTAACCGTTAACCGTTTGAAGAATTGTTTCTTTTTGGGTTTGGAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTTTGTGGATTGATATTTATTCGTTGGGCTACGAATGTGGCCGTCAGTTTGATTGAGGGAAACTGTTTGCTAAAGAAAAAAGTGCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAACGACCCTTTGGTTGGCATCGGTTCTTAGCACATGGGAGCCGTTGTTCAATCAGAGTAACCATAGGAGTTCAAGAACCACTGGGAGGATTCTGGATGCTATTACATGGACTCTTGTTGCTCTTCTTATAGGGTCATTCCTATGGTTGATAAAAACATTGTTGTTGAAAATACTGGCGTCCAAGTTCCATAAGGATCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACCCTCTTGGGGTCTCCACTATTGGAGGGAGCTGAAAGTGCTGCCAAGTTCAGCCGTTGTCTATTTAGTTTGGAGAGTAATAAATCAGACCATAAGAAGTTAATTGACATGGGAAAGATTCACCAGCTGCAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTTGAGGCAGTTTCAAGTTCGGCGATGTCAATCTCACAAATACTTGATGAAAGCTACTATAATGTTGGCGATGGCGAGATTGACCATGAAATGGAAATTGCCAGTGTCGTTGCCTCCAAGATCCTTAGAAATGTTGCTCTTCCTGGAAAAAAGTTCATACAGGAAGAGGATCTTCAGAAATTCCTGGTCAAAGAAGAAATTGATTTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAGAATTGGCAAGAAAGCTCTCAAAAAATGGGTGGTGAAGGTTTATCAAGAGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACTGCTGTGAAGCAATTGAATAATTTGGTAACAGCGGTTGTTATAATAGTAATGACTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACGCTTGCAAGACTACATTTGAAGCTCTAATCTTTGTGTTTGTTATGCACCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGGGTCCAGCTGTTGGTTGAAGAAATGAACATCTTAACGACAGTCTTCTTGAAACTAAACAATGAGAAGGTGTATTATCCCAACTCAGTCTTGGCAACAAAGCCCATCAGTAACTACTACAGAAGTCCAGACATGAGCGAGACCACCGAATTCTCAATCAGTTTCGCAACACCACTAGAGAGGATTGGAGCCATGAAAGAAAAAATAAAGAGTTATTTGGAGAAAAATCCACAACACTGGCGTCCAAATCATCTTTTGGTGGTGAGAGAGATCGAAAACGTGAATGAGATAAAGATTGCTCTTTTTTCTACCCACACCATGAGTTATCAAGAATATGGTGAGAAGCTCAAACGAAGATCCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAATATCAACTACAATCTTCCACCTCAAACAATTCATCTCTTTCCAGTTGAAGCGCACTAA 2211 41.56 MDVNGNKPMKVVRRSSSQKEGENAGQVVVDISTSSVVFPKETRDENNYSVLNQNRVDSQNKESTGSSIDHGYDSHRPPTANQPLKIPSSNRPPMPRRSLKRSILSRPKSRFGEQPRHIDSEDMFEENHESLREQIGATSSRTSAPNTPKAQPEEEDEEDIVKTEQLNKKHKKWKVKTMIKWVVVFCPTGCLVASLTVNRLKNCFFLGLEVWKWCLLATVIFCGLIFIRWATNVAVSLIEGNCLLKKKVLYFVHGLKKSVQTTLWLASVLSTWEPLFNQSNHRSSRTTGRILDAITWTLVALLIGSFLWLIKTLLLKILASKFHKDRFFDRIQESIFHHHVLQTLLGSPLLEGAESAAKFSRCLFSLESNKSDHKKLIDMGKIHQLQREKVSAWTMKVLVEAVSSSAMSISQILDESYYNVGDGEIDHEMEIASVVASKILRNVALPGKKFIQEEDLQKFLVKEEIDFVLPHFEVDETRRIGKKALKKWVVKVYQERKTLAHALKDTKTAVKQLNNLVTAVVIIVMTVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNACKTTFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMSETTEFSISFATPLERIGAMKEKIKSYLEKNPQHWRPNHLLVVREIENVNEIKIALFSTHTMSYQEYGEKLKRRSELVMELKRIFEELNINYNLPPQTIHLFPVEAH 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1268851 1272821 - MELO3C016905.2.1 Cme07g00187 332203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00187 736 Pfam Mechanosensitive ion channel 515 720 IPR006685 GO:0016020|GO:0055085
Cme07g00187 736 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 26 730 - -
Cme07g00187 736 MobiDBLite consensus disorder prediction 106 132 - -
Cme07g00187 736 MobiDBLite consensus disorder prediction 18 67 - -
Cme07g00187 736 PIRSF Memb_At2g17000 13 734 IPR016688 -
Cme07g00187 736 SUPERFAMILY Sm-like ribonucleoproteins 563 623 IPR010920 -
Cme07g00187 736 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 26 730 IPR016688 -
Cme07g00187 736 MobiDBLite consensus disorder prediction 1 161 - -
Cme07g00187 736 Gene3D - 574 623 IPR023408 -
Cme07g00187 736 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00182 Cme-Chr7:1211909 Cme07g00187 Cme-Chr7:1268851 0 dispersed
Cme07g00187 Cme-Chr7:1268851 Cme11g01254 Cme-Chr11:19297825 1.70E-147 dispersed
Cme07g00186 Cme-Chr7:1260419 Cme07g00187 Cme-Chr7:1268851 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00187 K22048 - csv:101216955 1285.4