Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00191 ATGGTAAACCCACTCGGAAACTGTCTGACGTATCATCTTCAATCAAAAGCTTCGATTGGTATAAAACAAAATTCTCAAGAGACTGAAATGAAAGCAGCCATTTCTTCATTGATAAGCTCCAGAAATTTCAATCTCCATCAATCCTCACTCTCCCGCTCCATTTTCCGGCAGCCTTCCCTTCTTCTACCGTCTCGCTTTCCGGTCTCATCCACTGGCGGCGGCGGCGGCGGCGGAGACGCCAATTTTATCACCCTGCACCATAAGTTTCGTTTCCACTCCATCAAGTCCTCGGCAAGTATGGCATCATCCTTCAATCCCGAGCAAGCTAGATCTCCACCGGCACTTCCGTTGTCGATCCCTCCCTTAACAAAGTTTAAAATCGCGCTATGTCAATTGGCGGTGACGGCTGATAAGCAAAGGAATATTGAACATGCTCGTAAGGCCATTGAGGAGGCTGTGGAAAAAGGTGCCCAGCTTGTTGTATTGCCGGAAATATGGAATTGTCCTTATTCACATGATTGCTTACCACTTTATGCCGAGGACATTGAAGCCGGTGGTGATGCCTCCCCTTCAACAGCCATGCTGTCGGAAGTTTCTCGCCGTTTAAAAGTCACAATAGTCGGCGGCTCAATTGTAGAGCGCTCGGGGGATAAACTTTATAATTCTTCTTGTGTTTTTGGTACTGACGGAAAGCTGAAAGCTAAACACAGGAAGATTCATCTTTTTGATATTGATATCCCAGGAAAGATCACTTTTATTGAGTCCAAGACCATTGCAGCGGGTGAAACTCCTACTGTTGTAGACACAGAAGTTGGACGTATTGGCATAGGAATCTGTTATGACATCCGTTTTCCAGAACTAGCAATGATGTATGCTGCAAGAGGTGCTCACTTGATTTGCTATCCTGGGGCATTTAACATGACTACTGGACCATTGCACTGGGAGTTATTGCAGCGTTCAAGGGCTGTAGATAATCAGTTGTATGTGGCAACATGTTCACCTGCTCGAAATGCTGATGCTAGTTATGTAGCTTGGGGCCACTCAACCCTTGTTGGGCCGTTTGGGGAAGTGCTAGCTACAACGGAACATGATGAAGCAATAGTCATATCTGAGATTGATTATTCCTTCATAGAGCTTAGAAGGACTAACCTACCGCTTCTGAAACAAAGGCGTGGTGACCTTTACCAGTTGGTAGATGTTCAGAGGTTGAAATCCGAATGA 1221 45.7 MVNPLGNCLTYHLQSKASIGIKQNSQETEMKAAISSLISSRNFNLHQSSLSRSIFRQPSLLLPSRFPVSSTGGGGGGGDANFITLHHKFRFHSIKSSASMASSFNPEQARSPPALPLSIPPLTKFKIALCQLAVTADKQRNIEHARKAIEEAVEKGAQLVVLPEIWNCPYSHDCLPLYAEDIEAGGDASPSTAMLSEVSRRLKVTIVGGSIVERSGDKLYNSSCVFGTDGKLKAKHRKIHLFDIDIPGKITFIESKTIAAGETPTVVDTEVGRIGIGICYDIRFPELAMMYAARGAHLICYPGAFNMTTGPLHWELLQRSRAVDNQLYVATCSPARNADASYVAWGHSTLVGPFGEVLATTEHDEAIVISEIDYSFIELRRTNLPLLKQRRGDLYQLVDVQRLKSE 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1296195 1300741 - MELO3C016902.2.1 Cme07g00191 332207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00191 406 SUPERFAMILY Carbon-nitrogen hydrolase 123 398 IPR036526 -
Cme07g00191 406 Pfam Carbon-nitrogen hydrolase 126 377 IPR003010 GO:0006807
Cme07g00191 406 ProSitePatterns Uncharacterized protein family UPF0012 signature. 275 295 IPR001110 -
Cme07g00191 406 Gene3D - 122 400 IPR036526 -
Cme07g00191 406 PANTHER NITRILASE-RELATED 89 405 - -
Cme07g00191 406 CDD nit 126 391 IPR045254 GO:0016811
Cme07g00191 406 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 89 405 - -
Cme07g00191 406 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 125 374 IPR003010 GO:0006807
Cme07g00191 406 Coils Coil 135 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00191 K13566 NIT2, yafV; omega-amidase [EC:3.5.1.3] - csv:101213917 695.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00191 Cme-Chr7:1296195 Cme10g00834 Cme-Chr10:5549575 8.97E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g141 . . . . Bpe02g01554 . . . . . Cma01g01709 . Car09g00306 . . . Cpe06g00254 . . . . . . . Cla05g01615 Cam05g1728 Cec05g1731 Cco05g1789 Clacu05g1717 Cmu05g1601 Cre05g1725 Cone4ag1690 Cone7ag1609 . Cone20ag0282 Lsi04g01397 . . . Blo17g00275 Blo18g00264 Bda01g01342 Bda13g01588 Bpe14g00277 . . Bma02g00546 Sed06g0788 Cmo01g01803 Cmo09g00357 Cma09g00358 . Car01g01327 . . Cpe02g00284 Bhi09g03094 Tan01g3460 Cmetu01g2122 . Hepe01g1910 Mch11g0442 . . . . . . . . . . . Cme07g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004723 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00191 Cme_Chr07 FPKM 11.68768 12.573191 7.295934 8.016729 9.238602 10.374922 10.723596 11.651679 10.802226 12.774275