Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00197 ATGCGACAGAAGCTACTGGAACCTCCTTCTTCCAACTCTTCTCAACACTTCCAGAAAATTCCTCCTCCCATTCATTCCTTATTCACTCTCTCATTCACAACATCTATAAAATCCAACCAACCTTTCGGCCATTTGCAACAACAAAAATCAGCTCTTCCGTTTACGAGAACGACTTCCATAACCAAAATTTCCTTTCCTACAAGCATTTCTAATTCGTTAAAAGACTCCAAAATTTCTCCACCTATCAAGAGAAAAATGGATTTCAGAATCATGGGCCTAGAGTCACCAATCTTCTCCACCCTCCAGCACGTGATGGACCTCGCCGACGAGGCCGATAAGTCTTTCAGCACACCTACCAGGGCTTACGTTCGGGACGCCAAGGCTATGGCAGCAACTCCAGCCGACGTCAAGGAGTATCCGAATTCCTATGTTTTCGTCGTTGACATGCCGGGGTTAAAGGTCGGTGACATCCAGGTTCAGGTTGAGGATGACAATGTGCTACTGATAAGTGGGGAGAGGAAGAGGGAGGAGGAGAAAGAAGCTAAGTATGTGAGGATGGAGAGGAGAGTTGGCAAGTTAATGAGGAAATTTGTGTTGCCGGAAAATGCCAACATTGATGCCATATCGGCGGTTTGTCAGGATGGTGTGCTCACTGTGACTGTGCAAAAGTTGCCACCACCTCAGCCTAAGAAGCCCAAGATCGTTGAGGTCAAGGTCAATTGA 723 46.61 MRQKLLEPPSSNSSQHFQKIPPPIHSLFTLSFTTSIKSNQPFGHLQQQKSALPFTRTTSITKISFPTSISNSLKDSKISPPIKRKMDFRIMGLESPIFSTLQHVMDLADEADKSFSTPTRAYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKVGDIQVQVEDDNVLLISGERKREEEKEAKYVRMERRVGKLMRKFVLPENANIDAISAVCQDGVLTVTVQKLPPPQPKKPKIVEVKVN 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1313911 1314973 + MELO3C016897.2.1 Cme07g00197 332213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00197 240 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 92 239 - -
Cme07g00197 240 MobiDBLite consensus disorder prediction 1 20 - -
Cme07g00197 240 Coils Coil 176 196 - -
Cme07g00197 240 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 125 240 IPR002068 -
Cme07g00197 240 Gene3D - 93 237 IPR008978 -
Cme07g00197 240 Pfam Hsp20/alpha crystallin family 135 238 IPR002068 -
Cme07g00197 240 CDD ACD_sHsps-like 135 221 - -
Cme07g00197 240 SUPERFAMILY HSP20-like chaperones 100 234 IPR008978 -
Cme07g00197 240 PANTHER 17.1 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 92 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00197 K13993 HSP20; HSP20 family protein - csv:101212955 238.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00197 Cme-Chr7:1313911 Cme07g00655 Cme-Chr7:5553266 5.21E-28 dispersed
Cme07g00196 Cme-Chr7:1312087 Cme07g00197 Cme-Chr7:1313911 6.63E-43 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g130 . . . . . . . . . . Cma01g01714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1780 . . . . . . . . Bhi09g03104 Tan01g4592 Cmetu07g0720 . Hepe01g1905 Mch11g0438 . . . . . . . . . . . Cme07g00197
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00197 Cme_Chr07 FPKM 3.888383 4.596407 0.490038 0.795669 4.12349 6.7809 4.816583 0.0 0.0 0.0