Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00198 ATGGGGCGCGTTAACAACAGAACCAAGGTGTCGCCGTCGAGAGCCGCCTACAAATCAGAAAATCGGAAGATGAGCAACGCCGACCGTTCGGCATACTTCGCTAGGAGAGAGGCGGCGAAGATATTGCGGCGTGTTCTCGAGGGAGACGCTCAACGTCGAGCCATAGCCTCCATCAAGTCACTCGTTTATGCTCCATCTGTTCGGAATAAGAAGGGCACATTCGCTCTTGTTTGCAAGACTCTCAAATACCTCCCTGTAATCAAGGACGTACTTGAGGCTGCTGATTTATTGAGCAACAAATGGAAGAGGCAGAAGGAATTAATTTATGTAATCATGTATGATATCCTCCTTGGCCAGAAAGCTCATCTAGCTGGCGATGCAGAGAAGTTTCTCATGCGGCAGCAAAGTGCTTTACAATCTGCTGTTACACAGCTTTTGTCGAAGAAAAAAGCAAACAATATTGAAGATTTAATAACTCGTGGTGATGATGATCCTGGTGTTTCAAGGCCCCGTTTTATTCGCGTGAATACTTTGAAGATGGATGTTCACACAGCAATAGAAGAATTAGGCAAAAGATATCCAGATCGATTCCATTATGACACTTGCGAAGAATTCCTAAATGGTGCCAGTTATCATTTCAAACAGGTTCTGAAGGATGATATGGTTCCTGACCTCTTGATACTTCCCCCAGGCAGTGACTTACATGATCATCCTCTGGTTGCAGATGGAAGTATCTTCTTACAAGGGAAGGCTAGTTCCATGGTTGCAGTAGCACTTGATCCCAAGCCAGGATGGGAAGTCCTTGATGCATGTTCAGCACCGGGTAACAAAACTGTCCACCTTGCCTCTCTCATGAATGGAAAAGGAAGGGTCATTGCATGTGAACTGAATGAAAGCAGGGTCCGTGCCATTCTTTTGGATCCTTCCTGCTCTGGATCTGGAACTGCGGCTGTCAGATTAGATCATTTGCTCCCGTCACATGTTGAAGGGACAACCTCTGGAGATGACCTTGAACGACTAAACAAACTCGCTGCCTTTCAGAGAAAGGCTCTTGCACATGCATTTTCCTTTCCAGCCGTAGAGAGAATTGTTTACAGCACTTGTTCCATTCATCAAATTGAAAATGAAGATGTCGTCCAGTCATTATTACCTCTTGCTGAATCACATGGTTTTCAACTAGATACTCCGTTCCCACAGTGGCAGCGACGAGGTCTCCCAGTGTTTGCCGGCGCTAACCACTTACTCCGAACCGATCCTGTTGAAGACAAAGAAGGGTTCTTCATAGCTCTATTTAAGAAGAAGCAGAACACGACGAACCCATTTCCCCGAAGTTTAAATATAGATAAAAGCTCAAGATATCGTAGTGGAGATGTCCGTAACAATCGGGCTTTAGCATGCCCTCCTACTAAGATCTCTAAACTGCGGTTGTATCAGTATGCACTTTCGACAAGGACACGATGGAGAAAGAACCACTCCATCCAAAACTAG 1488 45.43 MGRVNNRTKVSPSRAAYKSENRKMSNADRSAYFARREAAKILRRVLEGDAQRRAIASIKSLVYAPSVRNKKGTFALVCKTLKYLPVIKDVLEAADLLSNKWKRQKELIYVIMYDILLGQKAHLAGDAEKFLMRQQSALQSAVTQLLSKKKANNIEDLITRGDDDPGVSRPRFIRVNTLKMDVHTAIEELGKRYPDRFHYDTCEEFLNGASYHFKQVLKDDMVPDLLILPPGSDLHDHPLVADGSIFLQGKASSMVAVALDPKPGWEVLDACSAPGNKTVHLASLMNGKGRVIACELNESRVRAILLDPSCSGSGTAAVRLDHLLPSHVEGTTSGDDLERLNKLAAFQRKALAHAFSFPAVERIVYSTCSIHQIENEDVVQSLLPLAESHGFQLDTPFPQWQRRGLPVFAGANHLLRTDPVEDKEGFFIALFKKKQNTTNPFPRSLNIDKSSRYRSGDVRNNRALACPPTKISKLRLYQYALSTRTRWRKNHSIQN 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1315215 1319864 - MELO3C016896.2.1 Cme07g00198 332214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00198 495 Gene3D Vaccinia Virus protein VP39 248 301 IPR029063 -
Cme07g00198 495 Gene3D Vaccinia Virus protein VP39 302 440 IPR029063 -
Cme07g00198 495 MobiDBLite consensus disorder prediction 1 20 - -
Cme07g00198 495 Gene3D Sun protein; domain 3 161 247 - -
Cme07g00198 495 PRINTS RNA (C5-cytosine) methyltransferase signature 360 376 IPR023267 GO:0001510
Cme07g00198 495 PRINTS RNA (C5-cytosine) methyltransferase signature 416 433 IPR023267 GO:0001510
Cme07g00198 495 PRINTS RNA (C5-cytosine) methyltransferase signature 239 253 IPR023267 GO:0001510
Cme07g00198 495 PRINTS RNA (C5-cytosine) methyltransferase signature 268 278 IPR023267 GO:0001510
Cme07g00198 495 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 170 434 IPR029063 -
Cme07g00198 495 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 305 434 IPR001678 GO:0008168
Cme07g00198 495 PANTHER BNAA09G04380D PROTEIN 10 302 - -
Cme07g00198 495 PANTHER BNAA09G04380D PROTEIN 300 455 - -
Cme07g00198 495 MobiDBLite consensus disorder prediction 1 23 - -
Cme07g00198 495 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 302 IPR023267 GO:0001510
Cme07g00198 495 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 300 455 IPR023267 GO:0001510
Cme07g00198 495 Pfam 16S rRNA methyltransferase RsmB/F 257 304 IPR001678 GO:0008168
Cme07g00198 495 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 161 304 IPR001678 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00198 K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] - csv:101212715 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00787 Cme-Chr1:8152060 Cme07g00198 Cme-Chr7:1315215 5.02E-27 dispersed
Cme07g00198 Cme-Chr7:1315215 Cme07g00724 Cme-Chr7:6365382 4.47E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008710 0 4 1 1 0 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00198 Cme_Chr07 FPKM 0.0 0.0 0.0 0.0 6.822209 6.128469 7.375306 0.0 0.0 0.0