Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00203 ATGGATCAATTCAAAGGTCAACCTCGGCTCCCGAAATTTGCCGTTCCCAAACGATACGATATCTACATCAAACCGGACCTTTGCCTTTGCAAATTCTCTGAGACGCTACCATTTGGGTTAGGAACATTGCGGATGGACTTCGAAGGAATCTTGAATGATAATATGAAAGGATTCTATAGAAGCACTTATGAGCACAATGGTGAGAAGAAAAACATGGCTGTTACGCAATTTGAACCAGTTGATGCTAGGCGTTGCTTCCCTTGCTGGGATGAACCTGCTTTTAAGGCTACATTCAAGATCACGTTAGATGTACCATCTGAACTAGTAGCACTTTCCAACATGCCAATTGTTGAAGAAAAAGTGAATGGCGATTTGAAGACGGTTTCATATCAAGAATCACCAATTATGTCCACATATTTGGTGGCCATAGTTGTTGGTTTATTTGATTATGTGGAAGATCAAACAACTGATGGGGTCAAAGTTCGTGTATACTGTCAGGTTGGAAAGGCAAATCAAGGAAAATTTGCATTAGATGTTGCTGTTAAAACCCTTGACCTATACAAGGAATATTTTGCTGTGCCATACTCTCTGCCAAAACTCGACATGATTGCAATTCCTGACTTTGCTGCTGGGGCCATGGAAAACTATGGTTTAGTTACCTATCGTGAGACTGCTTTACTTTATGATGATCAGCACTCAGCAGCTGCTAACAAACAGAGGGTGGCAACTGTCGTGGCTCATGAACTTGCACACCAATGGTTTGGCAACCTTGTAACTATGGAATGGTGGACACATTTGTGGCTGAATGAGGGATTTGCGACATGGGTGAGTTATTTAGCAACTGATTCCTTATTTCCAGAGTGGAAAGTATGGAATCAATTTCTGGAAGAATCAAACCATGGTCTTACTTTGGATGCTCTGGCTGAATCACATCCAATTGAGGTTGAGATAAATCATGCCAGTGAGGTTGATGAAATATTTGATGCAATTAGCTACCGGAAAGGTGCATCTATTATTCGAATGCTACAAAGCTATCTCGGTCCGGAGTGTTTTCAGAGATCACTGGCTTCGTACATAAAAAGGCACAGATGCTCAAATACAAAGACTGAAGACTTATGGGCTGCTCTAGAGGAGGGATCTGGTGAACCCGTGAACAAATTAATGAGTTCCTGGACCAAGCAACAAGGATATCCAGTTGTCACAGTCAAAGTGAAAGATGAGAAATTGGTGTTTGAGCAGTCAAGATTTTTGTCGAGTGGTTCCTCTGGAGAGGGGCAATGGATTGTTCCTATAACATTGTGCTGTGGCTCCTATGATGTGCGCAAAAATTTTCTGCTGCAAACAGAGACAGAATCTGTAGACATCAAGCAGTCCCTTGGTTGCTCCCTCAGCAAATGCTGTGGTGGAAATGATAAATATTGTGATTGGATAAAGCTTAATGTAGACCAGACTGGTTTTTACCGGGTGAAATATGATGAAGATCTTGCAGCTAAGCTTAGAAATGCAATAGAGAAAAACCATTTGACTACAACGGACAGATTTGGTATTTTGGATGATGCATTTGCCCTTTCTATGGCTTGCCAGCAATCAGTTACCTCTTTGCTTACCTTGATGGGTGCTTATAGAGAAGAACTTGACTATACTATAAGCTACAAACTTGAAAGAATTGCAGCCGATGCAGTTCCTGAGTTGCTGGACAACCTAAGACAATTTTTCACCAACATTTTCCAATTTGCTGCAGAGAAACTTGGTTGGGACCCCAAACCAGGCGAAAGCCATCTTGATGCTATGTTGAGGGGAGAAATTTTGACTGCTCTTGCTCTGTTTGGTCATGAACAAACAATCCAAGAAGGGAATAGGCGATGCCTTGCATTCTTAGATGACAGAAGTACGCCACTACTCCCGCCTGATATTAGAAAGGCGGCGTATGTGGCCGTAATGCAGACAGTCAATGCTTCAAACAGATCTGGTTACGAATCACTTTTAAGAATTTATAGAGAGTCTGATCTTAGCCAGGAGAAAACACGCATTCTGAGTTCTTTGGCATCATGTCCAGATCCGAACATCATTCTTGAAGTTCTCAACTTTTTGTTATCGTCTGAGGTTCGTAGTCAAGATGCTATTTTTGGACTCGGTGTTAATTGGAAGGCACGTGAAACAGCTTGGACTTGGCTGAAGGCGAAGTGGGAAGAAATCTCGAAAATATTTGACTCTGGGTTTCTTATCGGACGCTTTGTCAGTGCCACTGTCTCTCCGTTTGCTTCATATGAAAAAGCTAAGGAAGTTGAGGAGTTCTTCGCAAGCCGTGTTAAGCCATCAATGGCCCGAACATTGAAGCAGAGCATCGAGCGTGTTCACATCAATTCGAGATGGGTTCAGAGCGTCCAGAAAGAGCGTGATCTTCCCAATGCTATAAACGAGCTAGCGTGGAGGCGATATTAG 2442 42.51 MDQFKGQPRLPKFAVPKRYDIYIKPDLCLCKFSETLPFGLGTLRMDFEGILNDNMKGFYRSTYEHNGEKKNMAVTQFEPVDARRCFPCWDEPAFKATFKITLDVPSELVALSNMPIVEEKVNGDLKTVSYQESPIMSTYLVAIVVGLFDYVEDQTTDGVKVRVYCQVGKANQGKFALDVAVKTLDLYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPEWKVWNQFLEESNHGLTLDALAESHPIEVEINHASEVDEIFDAISYRKGASIIRMLQSYLGPECFQRSLASYIKRHRCSNTKTEDLWAALEEGSGEPVNKLMSSWTKQQGYPVVTVKVKDEKLVFEQSRFLSSGSSGEGQWIVPITLCCGSYDVRKNFLLQTETESVDIKQSLGCSLSKCCGGNDKYCDWIKLNVDQTGFYRVKYDEDLAAKLRNAIEKNHLTTTDRFGILDDAFALSMACQQSVTSLLTLMGAYREELDYTISYKLERIAADAVPELLDNLRQFFTNIFQFAAEKLGWDPKPGESHLDAMLRGEILTALALFGHEQTIQEGNRRCLAFLDDRSTPLLPPDIRKAAYVAVMQTVNASNRSGYESLLRIYRESDLSQEKTRILSSLASCPDPNIILEVLNFLLSSEVRSQDAIFGLGVNWKARETAWTWLKAKWEEISKIFDSGFLIGRFVSATVSPFASYEKAKEVEEFFASRVKPSMARTLKQSIERVHINSRWVQSVQKERDLPNAINELAWRRY 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1347555 1357411 + MELO3C016890.2.1 Cme07g00203 332219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00203 813 CDD M1_APN-Q_like 12 393 IPR034016 -
Cme07g00203 813 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 32 809 - -
Cme07g00203 813 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 3 32 - -
Cme07g00203 813 Gene3D - 397 491 - -
Cme07g00203 813 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 22 146 IPR042097 -
Cme07g00203 813 Pfam ERAP1-like C-terminal domain 476 786 IPR024571 -
Cme07g00203 813 Gene3D tricorn interacting facor f3 domain 27 148 IPR042097 -
Cme07g00203 813 Gene3D - 493 799 - -
Cme07g00203 813 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 155 402 - -
Cme07g00203 813 Pfam Peptidase M1 N-terminal domain 41 140 IPR045357 -
Cme07g00203 813 PRINTS Membrane alanyl dipeptidase (M1) family signature 130 145 IPR001930 GO:0006508
Cme07g00203 813 PRINTS Membrane alanyl dipeptidase (M1) family signature 244 259 IPR001930 GO:0006508
Cme07g00203 813 PRINTS Membrane alanyl dipeptidase (M1) family signature 83 98 IPR001930 GO:0006508
Cme07g00203 813 PRINTS Membrane alanyl dipeptidase (M1) family signature 208 218 IPR001930 GO:0006508
Cme07g00203 813 PRINTS Membrane alanyl dipeptidase (M1) family signature 263 275 IPR001930 GO:0006508
Cme07g00203 813 PANTHER AMINOPEPTIDASE 32 809 - -
Cme07g00203 813 PANTHER AMINOPEPTIDASE 3 32 - -
Cme07g00203 813 Pfam Peptidase family M1 domain 175 391 IPR014782 GO:0008237|GO:0008270
Cme07g00203 813 Gene3D Neutral Protease Domain 2 149 396 IPR027268 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00203 K08776 NPEPPS; puromycin-sensitive aminopeptidase [EC:3.4.11.14] - csv:101215753 1484.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00203 Cme-Chr7:1347555 Cme09g00600 Cme-Chr9:6232375 3.81E-21 dispersed
Cme07g00199 Cme-Chr7:1322450 Cme07g00203 Cme-Chr7:1347555 5.33E-15 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g119 Blo01g01456 . Bda01g00630 . . Bpe02g00498 . . . . Cma01g01717 . . . . . . . . . . . . . Cla05g01851 Cam05g1975 Cec05g1988 . Clacu05g1968 Cmu05g1849 Cre05g1973 Cone4ag1679 Cone7ag1273 . . Lsi04g01408 . . . . . . . . . . . . Cmo01g01794 . . . Car01g01333 . . Cpe02g00276 Bhi09g03122 . . . Hepe01g1902 Mch11g0434 . . . . . . . . . . . Cme07g00203
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001781 2 8 2 2 1 2 2 2 3 3 2 2 2 3 2 2 2 2 2 2 3 2 2 2 2 2 3 1 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00203 Cme_Chr07 FPKM 25.388611 28.039318 41.216652 40.60796 21.674599 19.552801 21.291901 49.440552 52.910847 49.916714