Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00204 ATGGAGGATCGGGAGGAGGAAGAGAAGGCAGAGGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTATAGAGCTCAGATGAAGAACATTCAGGAGCGGAAGGAGAGGCGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCCAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAACGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAATCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGCGATATATATGCAATGAAGAAGTTGAAAAAATCTGAAATGCTGATGAGGGGGCAGGTGGAACATGTTAGAGCAGAAAGGAATTTACTAGCTGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTTCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTTCCAGGTGGAGATATGATGACTCTTCTTATGAGAGAAGACACATTGACCGAAAATGTAGCTAAATTTTACATTGCACAAAGTGTTCTAGCAATAGAATCCATCCATAGACACAACTATATTCACAGGGATATAAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATTTGGCAGAACCAATGGATATTGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGTTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACAGTTGGAACACCAGATTATATTGCTCCAGAAGTATTGCTTAAAAAAGGATATGGGATGGAGTGTGACTGGTGGTCGCTTGGTGCAATTATGTATGAAATGCTCGTAGGCTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATCAAAGCCCATCCATGGTTCAAAGATGTCGTCTGGGATAGGCTTTATGAAATGGAGGCGGCATTTAAGCCCGAGTTGGATCCACCTATTCCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCAAAAGATCTCAGCTTTGTTGGATATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGATGCTCAGAGATTATCAATGAAACAGCCTCCAATAGACGTATTAAATGGCACCGGGGCAGACTACACAACTGAACTAATAGGAAACGAGGCCGAAATGCAGATGGTAGCTGTATCAGGAGACCCCATGTTGCCATAA 1500 42.0 MEDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLIIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHDAQRLSMKQPPIDVLNGTGADYTTELIGNEAEMQMVAVSGDPMLP 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1355858 1361557 - MELO3C016889.2.1 Cme07g00204 332220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00204 499 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Cme07g00204 499 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 493 - -
Cme07g00204 499 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Cme07g00204 499 CDD STKc_NDR_like 91 444 - -
Cme07g00204 499 SMART serkin_6 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00204 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cme07g00204 499 Gene3D Transferase(Phosphotransferase) domain 1 179 411 - -
Cme07g00204 499 Pfam Protein kinase domain 285 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00204 499 Pfam Protein kinase domain 96 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00204 499 SUPERFAMILY Protein kinase-like (PK-like) 76 410 IPR011009 -
Cme07g00204 499 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00204 499 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00269 Cme-Chr2:2258759 Cme07g00204 Cme-Chr7:1355858 0 dispersed
Cme05g00575 Cme-Chr5:5821826 Cme07g00204 Cme-Chr7:1355858 0 dispersed
Cme07g00204 Cme-Chr7:1355858 Cme09g01488 Cme-Chr9:20083134 1.63E-78 dispersed
Cme07g00201 Cme-Chr7:1335626 Cme07g00204 Cme-Chr7:1355858 5.26E-50 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64997 PF00069 Pkinase 1.10E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00204 K08790 - csv:101212228 993.03