Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00215 ATGGGGGGTTCTGGGAAATGGATGAAGGTGTTTATAGGACAGAGGAAGTCTGATAAGGAAGACAAAGAGAAGTTGGGTGGTACTAAAACTAAGAAATGGAAGTTATGGAGGAGCCCATCAGGGGACTTGAGCTCTGCTTGGAAGGGTTATAAAGGAGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTAGAGCCGCTGATTCTTTTACTGCTGCTGTTGCCACTGTCCTCCGTGCTCCACCGAGGAATTTCCGGGTTGTCCGCCAAGAATGGGCTGCAATTAGGATTCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAACAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGTGTCAGAGCACGTCGTGTGAGGATGTCGGTCGAGGGGCAGGCCGTACAACAGTTGCTTAACGTACATCGCAGCAAGGCCGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAACTCAACTTCAAGAACAAATGCTTCGATTTATGCTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAAACAAGGTTGATGGAACAATCTCGCACCGAATCATTTGATGTCACTCCGCCTTCAAAGACCTGTATAGACTCTGCTGTGTCTAAACATTCCAAAGGTTCTGAACCAGGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCTTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTTTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCCGCATCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCGAGTTACATGAACCTTACAGAGTCAACAAAGGCGAAGCAAAAGACAAATAGTCATTTATCGCATCGAGTTCAAAGGCAGTCGATGGATGAGTCCCAGTTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGCTCTGATTCATCAGTCAATCCCTTTAAGCCAATGATGATGCCAACACGGTCGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 46.56 MGGSGKWMKVFIGQRKSDKEDKEKLGGTKTKKWKLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPRNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNVHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFDVTPPSKTCIDSAVSKHSKGSEPGLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDESQFLQKSAAFSNGDSKSSAGSDSSVNPFKPMMMPTRSDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1429531 1431982 + MELO3C016880.2.1 Cme07g00215 332231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00215 445 MobiDBLite consensus disorder prediction 389 429 - -
Cme07g00215 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Cme07g00215 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Cme07g00215 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 342 445 - -
Cme07g00215 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Cme07g00215 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 271 290 - -
Cme07g00215 445 MobiDBLite consensus disorder prediction 306 326 - -
Cme07g00215 445 MobiDBLite consensus disorder prediction 342 382 - -
Cme07g00215 445 MobiDBLite consensus disorder prediction 1 31 - -
Cme07g00215 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 12 30 - -
Cme07g00215 445 SMART iq_5 112 133 IPR000048 GO:0005515
Cme07g00215 445 SMART iq_5 89 111 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 271 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00215 - - - csv:101210019 820.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00215 Cme-Chr7:1429531 Cme10g00057 Cme-Chr10:431699 1.85E-41 dispersed
Cme02g00846 Cme-Chr2:11037114 Cme07g00215 Cme-Chr7:1429531 1.78E-60 transposed
Cme01g02835 Cme-Chr1:35275872 Cme07g00215 Cme-Chr7:1429531 1.12E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g00610 . 1 470 IQD Protein Family AT3G52290 54.2 1.6e-101 366.7
Cme02g00846 . 1 406 IQD Protein Family AT3G22190 56.7 1.3e-95 347.1
Cme07g00215 . 1 438 IQD Protein Family AT2G26180 60.5 1.0e-116 417.2
Cme08g00247 . 59 332 IQD Protein Family AT2G33990 52.5 3.2e-63 238.8
Cme07g01328 . 40 223 IQD Protein Family AT2G33990 53.5 5.8e-49 191.4
Cme08g00247 . 59 290 IQD Protein Family AT3G15050 50.4 4.8e-56 214.9
Cme07g01328 . 43 216 IQD Protein Family AT3G15050 61.6 1.0e-53 207.2
Cme11g02263 . 1 512 IQD Protein Family AT4G00820 50.4 5.9e-109 391.7
Cme06g00023 . 3 359 IQD Protein Family AT4G00820 52.8 3.1e-81 299.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00215 Cme_Chr07 FPKM 17.204355 18.888865 21.006536 21.234524 21.097439 20.603695 22.596483 29.285854 27.800402 27.260122