Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00215 ATGGGGGGTTCTGGGAAATGGATGAAGGTGTTTATAGGACAGAGGAAGTCTGATAAGGAAGACAAAGAGAAGTTGGGTGGTACTAAAACTAAGAAATGGAAGTTATGGAGGAGCCCATCAGGGGACTTGAGCTCTGCTTGGAAGGGTTATAAAGGAGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTAGAGCCGCTGATTCTTTTACTGCTGCTGTTGCCACTGTCCTCCGTGCTCCACCGAGGAATTTCCGGGTTGTCCGCCAAGAATGGGCTGCAATTAGGATTCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAACAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGTGTCAGAGCACGTCGTGTGAGGATGTCGGTCGAGGGGCAGGCCGTACAACAGTTGCTTAACGTACATCGCAGCAAGGCCGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAACTCAACTTCAAGAACAAATGCTTCGATTTATGCTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAAACAAGGTTGATGGAACAATCTCGCACCGAATCATTTGATGTCACTCCGCCTTCAAAGACCTGTATAGACTCTGCTGTGTCTAAACATTCCAAAGGTTCTGAACCAGGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCTTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTTTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCCGCATCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCGAGTTACATGAACCTTACAGAGTCAACAAAGGCGAAGCAAAAGACAAATAGTCATTTATCGCATCGAGTTCAAAGGCAGTCGATGGATGAGTCCCAGTTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGCTCTGATTCATCAGTCAATCCCTTTAAGCCAATGATGATGCCAACACGGTCGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 46.56 MGGSGKWMKVFIGQRKSDKEDKEKLGGTKTKKWKLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPRNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNVHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFDVTPPSKTCIDSAVSKHSKGSEPGLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDESQFLQKSAAFSNGDSKSSAGSDSSVNPFKPMMMPTRSDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1429531 1431982 + MELO3C016880.2.1 Cme07g00215 332231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00215 445 MobiDBLite consensus disorder prediction 389 429 - -
Cme07g00215 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Cme07g00215 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Cme07g00215 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 342 445 - -
Cme07g00215 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Cme07g00215 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 271 290 - -
Cme07g00215 445 MobiDBLite consensus disorder prediction 306 326 - -
Cme07g00215 445 MobiDBLite consensus disorder prediction 342 382 - -
Cme07g00215 445 MobiDBLite consensus disorder prediction 1 31 - -
Cme07g00215 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 12 30 - -
Cme07g00215 445 SMART iq_5 112 133 IPR000048 GO:0005515
Cme07g00215 445 SMART iq_5 89 111 IPR000048 GO:0005515
Cme07g00215 445 MobiDBLite consensus disorder prediction 271 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00215 Cme-Chr7:1429531 Cme10g00057 Cme-Chr10:431699 1.85E-41 dispersed
Cme02g00846 Cme-Chr2:11037114 Cme07g00215 Cme-Chr7:1429531 1.78E-60 transposed
Cme01g02835 Cme-Chr1:35275872 Cme07g00215 Cme-Chr7:1429531 1.12E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00215 - - csv:101210019 820.461