Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00220 | ATGGATAGATGTTTTGATTTATCTTGTGTTTTCAAACTCCTGTGTAATATTAAAAAAGAAAAAAGTTTGAATTTTGAATCAGACCCAGAAGCGGAAGTGATAGCCTTATCGCCAAAATCACTTCTGGCGACGAATAGATTTATATGCGAGATCTGTAAGAAGGGGTTTCAAAGAGATCAGAATTTGCAACTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTATGTGTGCCCGGAACTGACATGTGTACATCATCACCCGTCGAGAGCTCTCGGCGATCTAACCGGAATCAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCGGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCCAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACCCAACTCCTAAACTTACATCCCACCTTTTCCCATCTATTAATTTCCCTCTTAAATTTGAACACCAAGACCCTTTTTTCCCTCCTCCTCTTCCTCCTCCCCCTCCTCCTCATCAAAACCCTAGTAACCCTACTTCTTCAATCGGTCCGGGTCATCTTTTTGCTTCTTCTTGCCCTGCATGGGAAGTTAATAACAACAACAACAGCAATAATAATTCATGTTCAGCTGAAATTGCTCCATTTTTCCATCACATGGTTGGTTTTGAAGAGGCTGCCTCATTTGAAGAAGCTCTTAATGGGATATTGATGAATAATAACAATAGAGGTAATAAAAATGGTGGCAAAGGTGGTGCTGCCGGAGAAATAACGAGGGATTTTCTCGGGGGGCTGAGACCGGTGGATTCTTCTATGTTTCAGAATCATGAGATGATAAATAACGACATGTCGAATTTGGATTCGCCTTCTCCTTCTCCTTCGACGTTTGGACCGCACGGCCAGAACCAGAATACGACATGTTGGCGTCAAAATTAG | 1080 | 41.76 | MDRCFDLSCVFKLLCNIKKEKSLNFESDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNPTPKLTSHLFPSINFPLKFEHQDPFFPPPLPPPPPPHQNPSNPTSSIGPGHLFASSCPAWEVNNNNNSNNNSCSAEIAPFFHHMVGFEEAASFEEALNGILMNNNNRGNKNGGKGGAAGEITRDFLGGLRPVDSSMFQNHEMINNDMSNLDSPSPSPSTFGPHGQNQNTTCWRQN | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1456692 | 1459150 | + | MELO3C016876.2.1 | Cme07g00220 | 332236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00220 | 359 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 47 | 69 | IPR013087 | - | |
| Cme07g00220 | 359 | SUPERFAMILY | beta-beta-alpha zinc fingers | 46 | 143 | IPR036236 | - | |
| Cme07g00220 | 359 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 49 | 69 | IPR013087 | - | |
| Cme07g00220 | 359 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 16 | 201 | - | - | |
| Cme07g00220 | 359 | Gene3D | Classic Zinc Finger | 43 | 70 | - | - | |
| Cme07g00220 | 359 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 16 | 201 | - | - | |
| Cme07g00220 | 359 | MobiDBLite | consensus disorder prediction | 207 | 226 | - | - | |
| Cme07g00220 | 359 | MobiDBLite | consensus disorder prediction | 328 | 359 | - | - | |
| Cme07g00220 | 359 | SMART | c2h2final6 | 47 | 69 | IPR013087 | - | |
| Cme07g00220 | 359 | SMART | c2h2final6 | 123 | 143 | IPR013087 | - | |
| Cme07g00220 | 359 | MobiDBLite | consensus disorder prediction | 207 | 232 | - | - | |
| Cme07g00220 | 359 | Gene3D | Classic Zinc Finger | 82 | 171 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme07g00220 | Cme-Chr7:1456692 | Cme11g00875 | Cme-Chr11:11738322 | 5.19E-104 | dispersed | |
| Cme01g02839 | Cme-Chr1:35310736 | Cme07g00220 | Cme-Chr7:1456692 | 6.06E-100 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41599 | None | None | None | None | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00220 | K25870 | - | csv:101215280 | 587.03 |