Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme07g00228 | ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGAGGACTTAACGAGCATCAGCGATTGAGCGATGCTCGACCTGTAACACGACCAAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCGGGTTCGTCGTCATCTGGGTCTTCTTCGTCTTTGTCTATGGCGTCTTCTACTACAATGGGGAGATTGGAGGCTGTTGAATCAGTCGTTGATCCGGCGGCTTCTGGGGATGTTGTGGGCGGTGGTTGCGTGGATTTCAATGCCTTGGAAGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGTGCTTCCGATCCTGATTCTAGACAAGATACTGAATCAGCTCAGATCGACGCTGCCAAGCGGATGAGTCTTGGCTGTTCGCCTTCAGTCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGACGAGAAAGTGATGGATGGATTTTATGACTTATACGGCATTACTGCAAATTCTAGCACCCGTGGAAAGATGCCACTGTTAGTTGATCTTAAAGAGATATGTGTGACAAGTGATATTGATTATGAGGTGATTTTGGTAAATCGCTTGCTTGATCCTGAGCTTCAACAGCTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAATATGGCTTCATTTTAAGTGGCCTGGTTCAAAAAATTGCTGATATGGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCGCAGGAGTTATGAGATGCGTAGTTCTCTGAACACTATTATTCTACCACTTGGTCGTCTTGATATTGGACTTGCACGTCATAGAGCCTTGCTTTTTAAGGTGCTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGTTAATTCCCTCAGAGGCGCCCAGCTGTCAATTTTCGAATTATGGATTTGATAGAAGGCCAGCAGATGTTATAGAAGTTCCTGAAGATACACCAACATTACAAAATGATGGAGTCGAAGCAGTGTCAATTTCATCTACTCAAGATGAAGTAGCAAATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAATATTAGGAACTTTATTGAAGAAATTCAAAGTGGGAGTTCCGTTTATGATTTTGCAAAGCTTCTAGAATCAGAAAGCAGTGCCTGTGAAAGTTCATTGGGAGCATTTGCACAGTCTGCTTCTGCACAAAAGAAGAAAGTGAAAAAAGTGTCTAAATATGTCATAAGTGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGAATCGCAGGACAACGGTGAAAGGAAAGAAACTTTTCAAATGTATCCAATCAATGGAAAAGGGATCGATGTTGGGATCCAGAGCCACTCCTATATTTTAGCAAGCCACGGACAGTCTTCTGCTACTTCTACTGAAGCGGAGTATTTGAACAATGTTGTCCATGAAAATAAGCAGAAAGTGTCTTCTGGGGGATTGTCTCAAGAACAAACGGCCAATACAAATGCTAACAACCACAGCATTTTTTGGCCTCACAGTATGAAAAACGAGGGATTTGTGTTTGTCGATGCTAATGGTGAAGCAGGAAAATTGGTTGATGTTAATGGAACTTTTCATCGTGAACATATGGATGGTGTTTCATTGACATCTGATGCCGACTCTCATAAGAAACTAGGAAGTGCCTTAGTGAGTGAAGAAAGAAGATTGTTGCAAGATAAGAACAGTGGAAGTCTTCAATGCTTTGATTTATGTGAAAAGCCACTTGAAAATTTGTTAGAAACCGATGATAGTAAACTGCATGCTAGTGATGAGCACAATGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGTTTTTGGAATGAAGAATAATGGTTTTCTTTGTATCCCAGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGATCAAGATTTTTCTGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGGCTGAGGCATCCTAACGTTGTCCTTTTCATGGGCGCTGTCACTCGCCCTCCTCATTTCTCTATCCTTACGGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGGCCCAACTCTCAACTAGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTTCATAGAGATCTAAAGTCCCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGCGATTTTGGTTTGTCTCGTGTGAAGCAGAATACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCAGCCAATGAAAAGTGTGATGTGTATAGTTTTGGTGTAATATTGTGGGAGTTGACGACATGTCGCATACCGTGGAAAGGTTTGAACCCAATGCAGGTCGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAAATTCCACAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGGACTCACAATTGAGGCCGTCGTTTTCTCAGCTTATTAGTCGATTGCGGCGCCTGCAACGGCTTGTTCAGAAAACAGACTCCAGGAATCAAATACCGGATAAAGTTTGGAAAACACAACTGAATAGGGAAGGTGCTAGTTCATTCAAAGTGGGGGCTGAGCACAAACCTATTTAG | 3024 | 42.36 | MSKMKHLLRKLHIGGGLNEHQRLSDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMASSTTMGRLEAVESVVDPAASGDVVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSVSGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADMVVARMGGPVGDAEEMLRRWTRRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADVIEVPEDTPTLQNDGVEAVSISSTQDEVANVCNLISKEASDLDAQSKENIRNFIEEIQSGSSVYDFAKLLESESSACESSLGAFAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIESQDNGERKETFQMYPINGKGIDVGIQSHSYILASHGQSSATSTEAEYLNNVVHENKQKVSSGGLSQEQTANTNANNHSIFWPHSMKNEGFVFVDANGEAGKLVDVNGTFHREHMDGVSLTSDADSHKKLGSALVSEERRLLQDKNSGSLQCFDLCEKPLENLLETDDSKLHASDEHNETINPILGEVAEWEIPWEDLHIGERIGIVFGMKNNGFLCIPGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPQDVDPAVAQIICDCWQTDSQLRPSFSQLISRLRRLQRLVQKTDSRNQIPDKVWKTQLNREGASSFKVGAEHKPI | 1007 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1500074 | 1509687 | + | MELO3C016868.2.1 | Cme07g00228 | 332244 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme07g00228 | 1007 | MobiDBLite | consensus disorder prediction | 11 | 64 | - | - | |
Cme07g00228 | 1007 | SMART | serkin_6 | 722 | 972 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme07g00228 | 1007 | ProSiteProfiles | Protein kinase domain profile. | 713 | 972 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme07g00228 | 1007 | MobiDBLite | consensus disorder prediction | 44 | 64 | - | - | |
Cme07g00228 | 1007 | PANTHER | SERINE/THREONINE-PROTEIN KINASE EDR1 | 83 | 980 | - | - | |
Cme07g00228 | 1007 | PRINTS | Tyrosine kinase catalytic domain signature | 873 | 883 | IPR001245 | GO:0004672|GO:0006468 | |
Cme07g00228 | 1007 | PRINTS | Tyrosine kinase catalytic domain signature | 787 | 800 | IPR001245 | GO:0004672|GO:0006468 | |
Cme07g00228 | 1007 | PRINTS | Tyrosine kinase catalytic domain signature | 936 | 958 | IPR001245 | GO:0004672|GO:0006468 | |
Cme07g00228 | 1007 | PRINTS | Tyrosine kinase catalytic domain signature | 892 | 914 | IPR001245 | GO:0004672|GO:0006468 | |
Cme07g00228 | 1007 | PRINTS | Tyrosine kinase catalytic domain signature | 826 | 844 | IPR001245 | GO:0004672|GO:0006468 | |
Cme07g00228 | 1007 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 832 | 844 | IPR008271 | GO:0004672|GO:0006468 | |
Cme07g00228 | 1007 | SUPERFAMILY | Protein kinase-like (PK-like) | 722 | 976 | IPR011009 | - | |
Cme07g00228 | 1007 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 144 | 348 | - | - | |
Cme07g00228 | 1007 | Gene3D | Transferase(Phosphotransferase) domain 1 | 791 | 1002 | - | - | |
Cme07g00228 | 1007 | Gene3D | Phosphorylase Kinase; domain 1 | 693 | 790 | - | - | |
Cme07g00228 | 1007 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 83 | 980 | - | - | |
Cme07g00228 | 1007 | CDD | STKc_MAP3K-like | 722 | 965 | - | - | |
Cme07g00228 | 1007 | Pfam | Protein tyrosine and serine/threonine kinase | 722 | 965 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00166 | Cme-Chr2:1237800 | Cme07g00228 | Cme-Chr7:1500074 | 1.60E-70 | dispersed | |
Cme07g00228 | Cme-Chr7:1500074 | Cme12g01838 | Cme-Chr12:24732892 | 5.35E-82 | dispersed | |
Cme07g00228 | Cme-Chr7:1500074 | Cme04g02435 | Cme-Chr4:30989682 | 1.26E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64998 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-62 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme07g00228 | K04424 | - | csv:101214554 | 1775.37 |