Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00238 ATGGAAGCAATCGAAGTTGAGAGAGGAGGAAGTGGATACTCGCTGAAACCATCGAGATTAAACAACGAAGACATTCTCTTCTGCATAGATGTGAACCCTGAATCTTCCGTTGAGATCAAAACCACCGGCTCTAATGGACGACCCATCACCAGAATGGACTCTATTAAGCAAGCAATTCTTCTATTTGTCCACGCCAAACTCTCCATGAATCCTGACCATCGATTTGCTTTCACCACCATCGCCAAATCTGCCATTTGGCTCAAAAAGGAGTTTAGCAGTGACATTGCATCCGCAGAGGCTGCTGTCAGGGGACTTGGTGCTACTTCCCCTTGCAATCATGCTGATCTTACCAGTCTTTTCCGATTAGCTGCTCACGAATCAAGAAAATCAACCGCCCAGAATCGGATTCTACGACTGATTCTTATTTATTGCAGATCATCGACACGGCCCCAACATCAATGGCCTGCAAACCAAAAACTCTTCACTTTTGATGTTATATACCTCCACGAGAAGCCTGGACCTGACAACTGCCCACAAGAGGTGTATGATGCCTTAGTTGATGCCCTTGATCATGTCAGCCAGTACGAAGGCTATATTTTCGAGAGTGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGTCTGTTGTTATCACACCCCCAGCAACGAATATCGCTAGATGATCTCGATATACCAAAGCCTCTTACAAAGAAATTGCCTCCCGCTGATTCCACCCCTCCAAACGAAGTTGTCCCTGTTACCAGCCAGTGA 774 46.51 MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLFRLAAHESRKSTAQNRILRLILIYCRSSTRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPPNEVVPVTSQ 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1541188 1543937 + MELO3C016858.2.1 Cme07g00238 332254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00238 257 MobiDBLite consensus disorder prediction 236 257 - -
Cme07g00238 257 SUPERFAMILY vWA-like 25 142 IPR036465 -
Cme07g00238 257 CDD vWFA 24 142 - -
Cme07g00238 257 Gene3D von Willebrand factor, type A domain 23 160 IPR036465 -
Cme07g00238 257 PANTHER UNCHARACTERIZED 11 250 IPR026126 GO:0045739|GO:0070531|GO:0070552
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00238 K20776 BABAM, NBA1, MERIT40; BRISC and BRCA1-A complex member 1 - csv:101206375 512.686
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g56 Blo01g01474 . . . . Bpe02g00480 . Bma01g02221 . . Cma01g01745 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01437 . . . . . . . . . . . Sed13g1850 Cmo01g01765 . . . Car01g01357 . . Cpe02g00252 Bhi09g03172 Tan01g4644 Cmetu07g0123 . Hepe01g1868 Mch11g0403 . . . . . . . . . . . Cme07g00238
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012607 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00238 Cme_Chr07 FPKM 80.490356 79.448814 4.713104 4.856011 329.23761 328.239594 298.902679 0.28701 0.0 0.358772