Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00239 ATGGGAATCTGTATATCCTCTGCATCTTCTCAGATTCGCCATGAAACCAACAAAGTTGGTAGTATTATTGAAGAAGATGATCATTATAAGTCATGTTATTCTGTATGCGGGATTCAGAAACTCGAATCCATTTGTTCTAAGCAAGGCAGCAAAGGAATCAATCAAGATGCTGCTTTTGCATATCAAGAGTTTGGAGAAGTTGAAGAGAGTGATTTGTTTGGAGTTTTTGATGGGCATGGACAGAATGGTCATATTGTGAGCAATTTAGTGAAGAATAGATTGCCTTCGTTATTGCTTAGGGAGGTAACTGCTAAGTCAAGTTTGGTGAAGAGGAAGAGTTTCAATACATGGAAAGAAGCTTTTGAAACTTCCTTCAAGGTTATGGATAAAGAGATCAAACTTCAAGAGAATTTGGATGGCTCTTTCAGTGGATCAACCGCTGTTGTTATCGTCAAACAGGGAGATTATTTGGTGATTGGGAATCTGGGGGATTCAAGGGCGGTGATGGGGAGGATGAGGGACGATGGTGGAATCAAAGCAGTTCAATTAACTACAGATTTAAAGCCAGGATTGGCGAGTGAGGGCGAGCGAATAAGAAGATGTAAAGGGAGAGTCTTGGCGCTGAAAGATGAGGCTCATATACAAAGAGTGTGGCTCCCCAACGAAGACGCACCGGGGCTGGCTATGTCAAGAGCTTTTGGTGATTTTGCTCTTAAAGATTATGGCATTATCAATCTCCCCGATGTCTCCTTCCGCCCTCTCACTTCTCACGATCGCTTCATCGTTCTCGCCACTGATGGGATATGGGATGTGCTGAGCAACGACGAAGTAGCGTCCATCGTTTGGGCGGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGATGCGGCGGCAGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCATTTGCCACTTCTTACAAACCCCAAAACAATGA 978 45.19 MGICISSASSQIRHETNKVGSIIEEDDHYKSCYSVCGIQKLESICSKQGSKGINQDAAFAYQEFGEVEESDLFGVFDGHGQNGHIVSNLVKNRLPSLLLREVTAKSSLVKRKSFNTWKEAFETSFKVMDKEIKLQENLDGSFSGSTAVVIVKQGDYLVIGNLGDSRAVMGRMRDDGGIKAVQLTTDLKPGLASEGERIRRCKGRVLALKDEAHIQRVWLPNEDAPGLAMSRAFGDFALKDYGIINLPDVSFRPLTSHDRFIVLATDGIWDVLSNDEVASIVWAAESEEAAAKAVVDAAAEAWKRYPSSKHDDCTVICHFLQTPKQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1546464 1548137 + MELO3C016857.2.1 Cme07g00239 332255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00239 325 ProSiteProfiles PPM-type phosphatase domain profile. 41 320 IPR001932 -
Cme07g00239 325 SMART PP2C_4 25 318 IPR001932 -
Cme07g00239 325 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 323 - -
Cme07g00239 325 CDD PP2Cc 43 317 IPR001932 -
Cme07g00239 325 PANTHER ALPHABET, ISOFORM E-RELATED 1 323 - -
Cme07g00239 325 SUPERFAMILY PP2C-like 40 321 IPR036457 -
Cme07g00239 325 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Cme07g00239 325 Gene3D - 40 322 IPR036457 -
Cme07g00239 325 Pfam Protein phosphatase 2C 45 299 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00239 Cme-Chr7:1546464 Cme11g02045 Cme-Chr11:28213585 1.88E-89 dispersed
Cme07g00239 Cme-Chr7:1546464 Cme05g01581 Cme-Chr5:25027632 1.30E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00239 - - csv:101214070 579.326