Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00245 | ATGATGATCGGAGAACAATCTAGATTCAACCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCATCATATAACCGGAGTTTCCTCGCCGGTTTTCGTTGCCGGTGGGGTCGATTCATTCATCGACTCTTTTTCCTCCATTCACCGGTACCTACCCTCTGCGGCGGATTCTGATGAATTGGATGGGGTGGGAGAGGCGGTGGACGGTTTTTCCTGCGATCATTTTCGGATGTTTGAGTTCAAAATCCGGAGATGTGCACGTGGGAGGTCGCACGATTGGACAGAGTGTCCGTACGCGCATCCTGGTGAGAAAGCTCGACGGCGTGACCCGAGGAAGTATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGAAATTGTAAGAAAGGGGATTCTTGTGATTTTGCTCATGGGATATTTGAGTGTTGGCTTCATCCAGCTCGGTATCGGACTCAGCCGTGTAAGGATGGGTTAGCTTGTCGCCGTCGTGTCTGTTTTTTCGCGCACACGCCGGAACAGCTTCGGGTTCTGCCGCAGCAGAGTCCGAGAACCCCTGTTTCGGCTGATTCCGTTGATGGGTCATCACGAGTTGCACATGCATTCGATTCATATTTTAGTAAAGGGTCATTTGTGACTTCACCCACTTCAATTCTATCAACGCCGCCTGTATCTCCGCCTTCTGACTCACCACCCCTATCTCCGAATTGTCCGTTTAATTCAATGAATGGATTGGTCTCGTGTATGCGCAATCTTCAACTTGGGAAATTAAAAGCAACCGGTCCTCATTGGGGAAGGATTCAATTAGGATCACAAAACCCTCTCTCTCCCTCCGGCTCTGGTTTGTACAACTTACCGTCAACTCCAACCACCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCTGCAATGGAGAGAGTGGAATCTGGGAGAGACTTAAGAGCTCAAATGTATGCGAAACTCAGCAAAGACAACTCTGTGAAGGAGATGGATTCGACATTGACACCCGATGTCGGATGGGTTTCGGAGCTATTAATGTGA | 1056 | 49.05 | MMIGEQSRFNHTIQVPPWDPLEDHHITGVSSPVFVAGGVDSFIDSFSSIHRYLPSAADSDELDGVGEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSVDGSSRVAHAFDSYFSKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQLGKLKATGPHWGRIQLGSQNPLSPSGSGLYNLPSTPTTGNYELWGKNYEEEPAMERVESGRDLRAQMYAKLSKDNSVKEMDSTLTPDVGWVSELLM | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1573011 | 1574066 | - | MELO3C016852.2.1 | Cme07g00245 | 332261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00245 | 351 | Gene3D | - | 113 | 185 | - | - | |
| Cme07g00245 | 351 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 350 | IPR045234 | - | |
| Cme07g00245 | 351 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 350 | - | - | |
| Cme07g00245 | 351 | SMART | c3hfinal6 | 116 | 142 | IPR000571 | GO:0046872 | |
| Cme07g00245 | 351 | SMART | c3hfinal6 | 151 | 174 | IPR000571 | GO:0046872 | |
| Cme07g00245 | 351 | ProSiteProfiles | Zinc finger C3H1-type profile. | 117 | 143 | IPR000571 | GO:0046872 | |
| Cme07g00245 | 351 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 121 | 141 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme05g02028 | Cme-Chr5:28697204 | Cme07g00245 | Cme-Chr7:1573011 | 2.33E-108 | dispersed | |
| Cme07g00245 | Cme-Chr7:1573011 | Cme11g01387 | Cme-Chr11:20650326 | 8.27E-55 | dispersed | |
| Cme07g01806 | Cme-Chr7:23508122 | Cme07g00245 | Cme-Chr7:1573011 | 2.46E-54 | transposed | |
| Cme01g00304 | Cme-Chr1:2271097 | Cme07g00245 | Cme-Chr7:1573011 | 1.42E-65 | transposed | |
| Cme02g00207 | Cme-Chr2:1614273 | Cme07g00245 | Cme-Chr7:1573011 | 9.14E-111 | wgd | |
| Cme03g02135 | Cme-Chr3:28568077 | Cme07g00245 | Cme-Chr7:1573011 | 3.09E-61 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41601 | PF00642 | zf-CCCH | 6.00E-05 | CL0537 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00245 | - | - | csv:101205433 | 702.975 |