Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00247 | ATGGAGGAATATAATAATGATGTAAATGAAAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAAGTAATTTCGGAAGATCAACGGCTGAGATGAATGTTAATAATTTTCATCTTCAACAAGGAGCCGACTGTTTTCAAACACCTCATCATCAATCGATTGTCAAGACTGAAGCTACTACTTCACAACATCACCACCTTCTCAAATTCCATTACCCTTTAATCCGACAACCACCACCACCACCTCAGCCGCAAACGACATGTCGTCCCGAACAAAACGGTGTCGTTGATTTTGAAGCCATTAAGGCAAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGACAAGAATTTGAAGCACGACAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTATGATATGTTGGTGAAATATCGGGAAGAACTCTCAAGGCCGATTCAAGAAGCTATGGATTTTATGCGAAGGATTGAATCTCAGCTTACATCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCTGATTACAGATGA | 654 | 43.43 | MEEYNNDVNENSNGRGNFLYGSGNSSSSNFGRSTAEMNVNNFHLQQGADCFQTPHHQSIVKTEATTSQHHHLLKFHYPLIRQPPPPPQPQTTCRPEQNGVVDFEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDYR | 217 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1603493 | 1607871 | + | MELO3C016850.2.1 | Cme07g00247 | 332263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00247 | 217 | Pfam | KNOX1 domain | 105 | 147 | IPR005540 | GO:0003677|GO:0005634 | |
| Cme07g00247 | 217 | SMART | KNOX1_2 | 104 | 148 | IPR005540 | GO:0003677|GO:0005634 | |
| Cme07g00247 | 217 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cme07g00247 | 217 | Pfam | KNOX2 domain | 160 | 205 | IPR005541 | GO:0003677|GO:0005634 | |
| Cme07g00247 | 217 | SMART | KNOX2_2 | 155 | 206 | IPR005541 | GO:0003677|GO:0005634 | |
| Cme07g00247 | 217 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 216 | - | - | |
| Cme07g00247 | 217 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 216 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme07g00247 | Cme-Chr7:1603493 | Cme07g00094 | Cme-Chr7:577212 | 5.65E-08 | dispersed | |
| Cme07g00247 | Cme-Chr7:1603493 | Cme10g00541 | Cme-Chr10:3457746 | 4.82E-27 | transposed | |
| Cme07g00247 | Cme-Chr7:1603493 | Cme08g00429 | Cme-Chr8:2617977 | 6.03E-27 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00247 | - | - | csv:101213104 | 399.438 |