Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme07g00258 | ATGGGTGATCTCGAAAATGATGAAATGGGTTTTAGGAATTCGAATGATGGGTTAATGAATTGTCCATCTACAATGGCGATGGGTTCTTTTTTTGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGTGAGAATTATGGAGCAGCTTCTTCAATGGTGTCCTCTCATGGCGAATTTTCTAATTCATTTCCTGTTGTTTTGGAGAATCATGGAGGGAGTGGGACAACACAACAAGGTGTTCAATATCCGACGGATTTGGAGATGGGTTCGAAGTTGCCATGTTTTGGGAGTGGGAATTTTTCAGAAATGTTTGGTTCTTTTGGTGTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGGAGGAACTACAAACACTACACAAACATCACAAGAAAATTTACCTTTAACTGGTGAAGAAAATTTACCATTATCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGGCCTTGATTCAACTTTCCCGTTTAACTCAAATAAGAAATCTGATATGAAATTGAAGAAGGATGTTTCTGGGGATAGTTCCAGTACACAAGAAGAGAAAAATGCAGAAATGGAGCAAAATTTAGGTGGGAATTCACGTGGAAAATCAACTGGAAAACAAACTAAAGAGAAATCTAATAATAGTGCTGAAGCTCCCAAGGAAAATTATATTCATGTGAGAGCTAGAAGAGGGCAAGCCACAAATAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATAAGTGAAAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGTAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTAGCTACTGTCAACCCGGATGTGAACGTCGATATCGAAAGGATTTTATCCAAAGATATTTTCAACGTACGAGGCAGCAATGGAAATGTTCTTGGATTTGATCCCGGGTTGAGCGCCGTTTCCCCCGTCCCTCCTCACCGGATGTTTCAGTTTCAAGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACCATGTTAGAAAGCGATCTTCAAAGTCTTCTTCAAATGGGATTCGACTCAGGTTCAACCATTGACAATTTGGGACCAAATGGTATTCTTCATACTATTGTCTTTGCATTACAATCTTCAAAAGATAGAGATGTTTGA | 1242 | 40.26 | MGDLENDEMGFRNSNDGLMNCPSTMAMGSFFGSGWDPLVSLGQSENYGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTDLEMGSKLPCFGSGNFSEMFGSFGVAGQILGGCSSNYRNGGTTNTTQTSQENLPLTGEENLPLSVGSPNGKIRKRGLDSTFPFNSNKKSDMKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKSTGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFNVRGSNGNVLGFDPGLSAVSPVPPHRMFQFQGTMSNMPTTSTQFPPLPQTMLESDLQSLLQMGFDSGSTIDNLGPNGILHTIVFALQSSKDRDV | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1678327 | 1681873 | - | MELO3C016841.2.1 | Cme07g00258 | 332274 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme07g00258 | 413 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 23 | 398 | IPR024097 | GO:0006355 | |
Cme07g00258 | 413 | PANTHER | TRANSCRIPTION FACTOR BHLH FAMILY-RELATED | 23 | 398 | - | - | |
Cme07g00258 | 413 | Gene3D | - | 235 | 308 | IPR036638 | GO:0046983 | |
Cme07g00258 | 413 | MobiDBLite | consensus disorder prediction | 173 | 187 | - | - | |
Cme07g00258 | 413 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 236 | 303 | IPR036638 | GO:0046983 | |
Cme07g00258 | 413 | MobiDBLite | consensus disorder prediction | 126 | 248 | - | - | |
Cme07g00258 | 413 | MobiDBLite | consensus disorder prediction | 188 | 218 | - | - | |
Cme07g00258 | 413 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
Cme07g00258 | 413 | Pfam | Helix-loop-helix DNA-binding domain | 241 | 289 | IPR011598 | GO:0046983 | |
Cme07g00258 | 413 | CDD | bHLH_AtBPE_like | 228 | 313 | - | - | |
Cme07g00258 | 413 | SMART | finulus | 244 | 294 | IPR011598 | GO:0046983 | |
Cme07g00258 | 413 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 238 | 288 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01735 | Cme-Chr2:24345556 | Cme07g00258 | Cme-Chr7:1678327 | 4.84E-30 | dispersed | |
Cme07g00258 | Cme-Chr7:1678327 | Cme11g00114 | Cme-Chr11:1054206 | 1.38E-42 | dispersed | |
Cme01g01854 | Cme-Chr1:26381109 | Cme07g00258 | Cme-Chr7:1678327 | 4.80E-24 | transposed | |
Cme01g02003 | Cme-Chr1:28563473 | Cme07g00258 | Cme-Chr7:1678327 | 6.43E-22 | transposed | |
Cme02g00158 | Cme-Chr2:1175971 | Cme07g00258 | Cme-Chr7:1678327 | 6.92E-23 | transposed | |
Cme02g01076 | Cme-Chr2:15788112 | Cme07g00258 | Cme-Chr7:1678327 | 1.47E-22 | transposed | |
Cme02g01919 | Cme-Chr2:25599042 | Cme07g00258 | Cme-Chr7:1678327 | 8.29E-41 | transposed | |
Cme03g01315 | Cme-Chr3:22669321 | Cme07g00258 | Cme-Chr7:1678327 | 1.84E-43 | transposed | |
Cme04g02213 | Cme-Chr4:29332493 | Cme07g00258 | Cme-Chr7:1678327 | 2.34E-34 | transposed | |
Cme05g01833 | Cme-Chr5:27184307 | Cme07g00258 | Cme-Chr7:1678327 | 1.04E-23 | transposed | |
Cme06g00870 | Cme-Chr6:5978443 | Cme07g00258 | Cme-Chr7:1678327 | 2.00E-48 | transposed | |
Cme09g01210 | Cme-Chr9:17001923 | Cme07g00258 | Cme-Chr7:1678327 | 2.18E-25 | transposed | |
Cme10g00327 | Cme-Chr10:2169290 | Cme07g00258 | Cme-Chr7:1678327 | 8.91E-54 | transposed | |
Cme03g02126 | Cme-Chr3:28490178 | Cme07g00258 | Cme-Chr7:1678327 | 4.58E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41603 | PF00010 | HLH | 4.30E-06 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme07g00258 | - | - | csv:101203971 | 763.451 |