Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00258 ATGGGTGATCTCGAAAATGATGAAATGGGTTTTAGGAATTCGAATGATGGGTTAATGAATTGTCCATCTACAATGGCGATGGGTTCTTTTTTTGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGTGAGAATTATGGAGCAGCTTCTTCAATGGTGTCCTCTCATGGCGAATTTTCTAATTCATTTCCTGTTGTTTTGGAGAATCATGGAGGGAGTGGGACAACACAACAAGGTGTTCAATATCCGACGGATTTGGAGATGGGTTCGAAGTTGCCATGTTTTGGGAGTGGGAATTTTTCAGAAATGTTTGGTTCTTTTGGTGTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGGAGGAACTACAAACACTACACAAACATCACAAGAAAATTTACCTTTAACTGGTGAAGAAAATTTACCATTATCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGGCCTTGATTCAACTTTCCCGTTTAACTCAAATAAGAAATCTGATATGAAATTGAAGAAGGATGTTTCTGGGGATAGTTCCAGTACACAAGAAGAGAAAAATGCAGAAATGGAGCAAAATTTAGGTGGGAATTCACGTGGAAAATCAACTGGAAAACAAACTAAAGAGAAATCTAATAATAGTGCTGAAGCTCCCAAGGAAAATTATATTCATGTGAGAGCTAGAAGAGGGCAAGCCACAAATAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATAAGTGAAAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGTAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTAGCTACTGTCAACCCGGATGTGAACGTCGATATCGAAAGGATTTTATCCAAAGATATTTTCAACGTACGAGGCAGCAATGGAAATGTTCTTGGATTTGATCCCGGGTTGAGCGCCGTTTCCCCCGTCCCTCCTCACCGGATGTTTCAGTTTCAAGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACCATGTTAGAAAGCGATCTTCAAAGTCTTCTTCAAATGGGATTCGACTCAGGTTCAACCATTGACAATTTGGGACCAAATGGTATTCTTCATACTATTGTCTTTGCATTACAATCTTCAAAAGATAGAGATGTTTGA 1242 40.26 MGDLENDEMGFRNSNDGLMNCPSTMAMGSFFGSGWDPLVSLGQSENYGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTDLEMGSKLPCFGSGNFSEMFGSFGVAGQILGGCSSNYRNGGTTNTTQTSQENLPLTGEENLPLSVGSPNGKIRKRGLDSTFPFNSNKKSDMKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKSTGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFNVRGSNGNVLGFDPGLSAVSPVPPHRMFQFQGTMSNMPTTSTQFPPLPQTMLESDLQSLLQMGFDSGSTIDNLGPNGILHTIVFALQSSKDRDV 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1678327 1681873 - MELO3C016841.2.1 Cme07g00258 332274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00258 413 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 398 IPR024097 GO:0006355
Cme07g00258 413 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 23 398 - -
Cme07g00258 413 Gene3D - 235 308 IPR036638 GO:0046983
Cme07g00258 413 MobiDBLite consensus disorder prediction 173 187 - -
Cme07g00258 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 303 IPR036638 GO:0046983
Cme07g00258 413 MobiDBLite consensus disorder prediction 126 248 - -
Cme07g00258 413 MobiDBLite consensus disorder prediction 188 218 - -
Cme07g00258 413 MobiDBLite consensus disorder prediction 126 142 - -
Cme07g00258 413 Pfam Helix-loop-helix DNA-binding domain 241 289 IPR011598 GO:0046983
Cme07g00258 413 CDD bHLH_AtBPE_like 228 313 - -
Cme07g00258 413 SMART finulus 244 294 IPR011598 GO:0046983
Cme07g00258 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 288 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01735 Cme-Chr2:24345556 Cme07g00258 Cme-Chr7:1678327 4.84E-30 dispersed
Cme07g00258 Cme-Chr7:1678327 Cme11g00114 Cme-Chr11:1054206 1.38E-42 dispersed
Cme01g01854 Cme-Chr1:26381109 Cme07g00258 Cme-Chr7:1678327 4.80E-24 transposed
Cme01g02003 Cme-Chr1:28563473 Cme07g00258 Cme-Chr7:1678327 6.43E-22 transposed
Cme02g00158 Cme-Chr2:1175971 Cme07g00258 Cme-Chr7:1678327 6.92E-23 transposed
Cme02g01076 Cme-Chr2:15788112 Cme07g00258 Cme-Chr7:1678327 1.47E-22 transposed
Cme02g01919 Cme-Chr2:25599042 Cme07g00258 Cme-Chr7:1678327 8.29E-41 transposed
Cme03g01315 Cme-Chr3:22669321 Cme07g00258 Cme-Chr7:1678327 1.84E-43 transposed
Cme04g02213 Cme-Chr4:29332493 Cme07g00258 Cme-Chr7:1678327 2.34E-34 transposed
Cme05g01833 Cme-Chr5:27184307 Cme07g00258 Cme-Chr7:1678327 1.04E-23 transposed
Cme06g00870 Cme-Chr6:5978443 Cme07g00258 Cme-Chr7:1678327 2.00E-48 transposed
Cme09g01210 Cme-Chr9:17001923 Cme07g00258 Cme-Chr7:1678327 2.18E-25 transposed
Cme10g00327 Cme-Chr10:2169290 Cme07g00258 Cme-Chr7:1678327 8.91E-54 transposed
Cme03g02126 Cme-Chr3:28490178 Cme07g00258 Cme-Chr7:1678327 4.58E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41603 PF00010 HLH 4.30E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00258 - - csv:101203971 763.451