Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00259 ATGGCCATGGAAGCTAGTTCTGAGCCTCAGCAACATTCTCACTACCATCACCGAAGCCAGGTAACTTCAGCAGTAGCTATCTCTAACACCATGTCAAATAGCTTCCTAGCTTCTCACCACTACAATGGAGATTTTCTTTCTGTAATGCCACTCAAGTCTGATGGGTCTCTTTGTATCATGGATTCAATCAACACATCACAACCTCAAGAAATATTGCCAAATATCTCACCAAAACTAGAGGATTTTCTTGGTGGTGCAACTCATGGAAAAGAAACCACAGCGCTAAGCTTAGACAGCATATATTACAATCAAAATGCTGAGGTTGGTTCAGAGAGACAACATTCTTTGAATCTTTTTAAGCAACAAGAGCAACAACAACATATTCTTTTTCATTCTGAGCGATATTATTCTGGAATGTTTCAATATCCTGCTGAGGATCCCAACAAGGAGTCTCATATTGCAAGCTATTGTTCTGAAATAAGACAAGATATGGAGCAGCGGATCAATGGGTGTTGCTTTGGGGGGATGAATTGCCAAGACTTGAAGCCACTTAGCTTGTCCATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTACTCCAAGTCAAATTTCTCAACCTGGACCATCTACCATGGAAATAAAGAAAAGGGCTCTGGCCAGTCAGAAGCAGCCGGTCCATCGGAAGTCGATAGACACATTCGGACAAAGAACTTCACAGTACAGAGGTGTTACTAGGCATAGATGGACTGGTAGATACGAGGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGATCCTCTACACATTTAAACTTCCCGTTAAAGAACTATGAACTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTGGCACACCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCTATATACAGAGGTGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGGAGAGTCGCTGGAAATAAAGACCTGTATCTTGGCACATTTGGCACACAAGAGGAAGCTGCAGAAGCCTATGATATAGCAGCTATCAAGTTTCGTGGTGCAAATGCTGTTACAAACTTCGACACGTCAAGGTACGATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCGGGAGATTTTGCGAGGCGAAAAAAAGAACACAAACCAACCAACTCCATCGAACATAAAGAACCAAAACAGAACGTGACACAAACTGACGAGGGGTCGGAGATATCCAACAACTTAGATTGGAGGGCGGTATTCCACGACAACCTGCTACTGGATCCAAGCGCAAGTGTCGAATCCATAGACCAAAAGTCCATGAACTCAAGTGGATACATGAATCATGTAATAGGAGTGGTCGAAACCGAAAGCTGTAATCAAGAAATTGTGAATGATTCAAAAAAGTACAAAGCTCGCTTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTGAGCAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATGGCTCATCCTCAGTATTATTTGCAAAATCCCCATTTGGAAACAATGGAAGTAATTGGCTTCCATCACCCCAAATGAGGCTTGCTCCTATTTCTTTGCCTGTTTGGAATGATGCATGA 1713 43.14 MAMEASSEPQQHSHYHHRSQVTSAVAISNTMSNSFLASHHYNGDFLSVMPLKSDGSLCIMDSINTSQPQEILPNISPKLEDFLGGATHGKETTALSLDSIYYNQNAEVGSERQHSLNLFKQQEQQQHILFHSERYYSGMFQYPAEDPNKESHIASYCSEIRQDMEQRINGCCFGGMNCQDLKPLSLSMSPGSQSSCVTTPSQISQPGPSTMEIKKRALASQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGSSTHLNFPLKNYELEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGANAVTNFDTSRYDVERIIASSSLLSGDFARRKKEHKPTNSIEHKEPKQNVTQTDEGSEISNNLDWRAVFHDNLLLDPSASVESIDQKSMNSSGYMNHVIGVVETESCNQEIVNDSKKYKARFSNASSVVSSLSSSRETSPDKSNGSSSVLFAKSPFGNNGSNWLPSPQMRLAPISLPVWNDA 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1695945 1699566 - MELO3C016840.2.1 Cme07g00259 332275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00259 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 12 538 - -
Cme07g00259 570 SUPERFAMILY DNA-binding domain 337 397 IPR016177 GO:0003677
Cme07g00259 570 MobiDBLite consensus disorder prediction 1 20 - -
Cme07g00259 570 Coils Coil 303 323 - -
Cme07g00259 570 CDD AP2 337 398 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 SMART rav1_2 338 402 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 SMART rav1_2 239 308 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 MobiDBLite consensus disorder prediction 417 445 - -
Cme07g00259 570 Gene3D AP2/ERF domain 338 398 IPR036955 GO:0003700|GO:0006355
Cme07g00259 570 Gene3D AP2/ERF domain 238 304 IPR036955 GO:0003700|GO:0006355
Cme07g00259 570 CDD AP2 238 302 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 SUPERFAMILY DNA-binding domain 238 303 IPR016177 GO:0003677
Cme07g00259 570 ProSiteProfiles AP2/ERF domain profile. 239 302 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 ProSiteProfiles AP2/ERF domain profile. 338 396 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 PRINTS Ethylene responsive element binding protein signature 378 398 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 Pfam AP2 domain 338 388 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 Pfam AP2 domain 239 294 IPR001471 GO:0003700|GO:0006355
Cme07g00259 570 MobiDBLite consensus disorder prediction 417 439 - -
Cme07g00259 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01293 Cme-Chr4:18125009 Cme07g00259 Cme-Chr7:1695945 8.14E-08 dispersed
Cme05g01005 Cme-Chr5:14308733 Cme07g00259 Cme-Chr7:1695945 3.60E-112 dispersed
Cme04g01962 Cme-Chr4:27233307 Cme07g00259 Cme-Chr7:1695945 1.91E-07 transposed
Cme05g00143 Cme-Chr5:972392 Cme07g00259 Cme-Chr7:1695945 1.97E-10 transposed
Cme03g02125 Cme-Chr3:28479280 Cme07g00259 Cme-Chr7:1695945 1.93E-07 wgd
Cme07g00259 Cme-Chr7:1695945 Cme08g00672 Cme-Chr8:4410391 1.81E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41604 PF00847 AP2 6.80E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00259 K09285 - csv:101212143 1078.93