Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00269 ATGCCGATGTACCAGCCTTCCGGTCGGAGAAGGGAGGATGATACGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGTGGCGGCGGTGGAGGCGGTGGGTTAATTTGTGAGGGTGGAATGACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTAGAGCCAATGCGAGATCCTGTGACCCTTTGTACTGGACAGACCTATGAACGATCTAATATCTTGAAATGGTTTTCTCTTGGCCATATAACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCGATCACTCCCAATAACACTCTTCACCAACTCATTTACAGTTGGTTTTCCCAGAAGTATTTGGCTATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGATACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGCCAAGTTGTAGCTTTGAATTCGGCAAAGAGCACTGTGGAAGACAATGGTGGTGTTGCTTTGATTTCATCTTTGTTGGGTCCTTTCACATCCCACGCGGTTGGCTCTGAAGCACTTGGGATTTTGGTGAACTTGGATCTTGATGCCGAGTCAAGGAGAAACCTTGTTCAACCTGCTAAGATTTCATTAATGGTGGACATGTTAAACGAGGGATCCACAGATACCAAAATCAACTGCACTAGATTGATCGAAACATTGCTCAATGGGGACGATTGTGGAACGGACACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTGAGATTAATCAAAGAAAAGAAACACCAAAATGGTGTTCTCGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACCAGTGAGGAACTCATTAGTGAGCATTGGCGCAATCCCTCAGTTGATCGAAATTCTCCCCAATTTCGACCCTGAATGTTTGGAACTAGCCCTTCACGTATTGGACTCACTCTCATCTCTCTCGGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTCAAATTATTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATTCTATGGTCAGTTTGTAAACTTGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGGTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGTGGTTGCAACCCTATTCTTAAACAACGCTCCGCCGAGCTTCTAAAGCTCTGCAGCTTAAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGAACAATACAATAA 1362 45.59 MPMYQPSGRRREDDTELGLGGGGQVLDVETAVKDGILGGGGGGGGLICEGGMTEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVALNSAKSTVEDNGGVALISSLLGPFTSHAVGSEALGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLNGDDCGTDTVSSLSLLVGLLRLIKEKKHQNGVLAGLRLLKALCSQEPVRNSLVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTIPNLVKLLMRISESCTQLALSILWSVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPILKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1749607 1752265 - MELO3C016831.2.1 Cme07g00269 332285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00269 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 42 452 - -
Cme07g00269 453 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Cme07g00269 453 Gene3D - 144 448 IPR011989 -
Cme07g00269 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Cme07g00269 453 SUPERFAMILY RING/U-box 64 140 - -
Cme07g00269 453 PANTHER WDSAM1 PROTEIN 42 452 IPR045185 GO:0061630
Cme07g00269 453 SUPERFAMILY ARM repeat 239 436 IPR016024 -
Cme07g00269 453 MobiDBLite consensus disorder prediction 1 22 - -
Cme07g00269 453 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Cme07g00269 453 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Cme07g00269 453 CDD RING-Ubox_PUB 74 116 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00269 Cme-Chr7:1749607 Cme08g01071 Cme-Chr8:7018231 9.99E-36 dispersed
Cme03g02117 Cme-Chr3:28401413 Cme07g00269 Cme-Chr7:1749607 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00269 - - csv:101223113 837.025