Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00287 ATGGAAAGTTATTTGAATGAGAATTTTGGTGACGTGAAGCCGAAAAACTCGTCGGAAGAAGCGCTTCAAAGATGGAGGCGGCTTTGCTGGCTGGTGAAGAATCGGAAACGGAGGTTTCGATTTACTGCCAATCTTTCTAAACGATTCGAAGCCAATGCTATTAGACGCTCCAATCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCTGCGCTTCAGTTCATCAATGGGTTGGATTTGTCTCCTGATTATGTTGTGCCTGAAGAGGTCAAACAAGCAGGTTTTGAAATTTGTGCAGATGAAGCAGGCTCCATTGTCGACGGCCGTGACGTGAAGAAGTTGAAGATTCATGGGGGCGCTGAGGGTATTGCAACTAAGCTCGCCACATCGACGGAGACAGGCATTCCTACTACAGACCATTTGATCAAGAAAAGAAGAGACGTTTACGGAATTAACAAATTCACCGAAAGCCCACCTCGAGGATTTTGGCTTTTTGTTTGGGAAGCTCTCCAGGATACGACTCTAATGATACTCGCTTTCTGTGCTGTTGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGGTGGCCGAAAGGTGCTCAAGATGGCCTTGGCATTGTTGCGAGTATCTTGCTTGTTGTATTTGTCACCGCCACCAGTGACTATAGGCAATCACTTCAGTTCAAGGATTTGGACAGGGAAAAGAAGAAGATTGCAATTCAGGTTACCAGACATGGATTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGACATTGTTCATCTTGCCATGGGTGACCAGGTACCAGCAGATGGACTTTTCGTTTCGGGGTACTCTCTTCTGATAAACGAATCCAGTTTAACAGGTGAGAGCGAACCAGTCAACGTAAATTCTCAAAATCCTTTCCTGTTGTCTGGAACAAAGGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGCATGAGAACCCAATGGGGAAAACTGATGGCCACTCTTAGTGAAGGAGGTGATGATGAGACTCCTCTGCAGGTAAAGCTCAATGGGGTGGCAACAATTATCGGTAAAATAGGCCTGTTTTTTGCTGTTATAACTTTCGCTGTATTGGTTCAAGGGTTGTTCAGTCGCAAGCTTCAAGAAGGGTCTTACTTCAGCTGGTCGGGAGATGAAGCAAGGGAAGTTCTGGAATTCTTTGCTGTCGCCGTAACTATTGTTGTGGTTGCCGTGCCTGAAGGGCTGCCTTTGGCGGTGACACTAAGTCTTGCATTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTAGCTGCTTGTGAGACGATGGGATCAGCTACTACCATTTGTAGTGACAAAACTGGAACCTTGACAACTAACCACATGACTGTTGTGAAAGCCTGCATCTGCAGCAAGGTCAGGGAAGTTGGCAATTCTAGCAAGTGTTCCGATTATCGTACAGAGCTTCCCGATTCCGCCGTTGGTATTTTGCTGCAATCGATATTTAACAACACTGGTGGAGAAATCGTCAAGAACAAAGATGGTAAGAATGAGACGCTTGGGACACCCACCGAGTCCGCTCTTCTGGAATTCGGCCTTTTGCTTGGTGGGGATTTCCAAGAAGAACGACAAAAGTCCAAAATCACCAGGGTCGAGCCGTTCAATTCTGTGAAGAAGCGAATGGGGGTTGTTTTGGAGCTCCCAGCCGGTGGCTTCCGCGTGCACAGCAAAGGTGCCTCAGAGATTGTTTTAGCTTCATGTGACAAAGTTCTTGACTCCGACGGTGAGGCAGTCCCTCTCAATGAAGAGTCCATCAACTTTTTGAAGGAAACCATCGAAGAATTTGCGGGCGAAGCTCTTCGAACTTTGTGCCTGGCTTACATGGACATTGAAGGCGGGTATAACCCTGAAAGTCCGATTCCCGCTTGTGGCTATACGTGCATAGGAATTGTTGGTATCAAGGATCCCGTTCGTCCAGGAGTCAAGGAGTCCGTTGCAATTTGTAAGGCCGCCGGTATAACTGTACGGATGGTTACGGGAGATAACATCACTACCGCCAAAGCAATTGCTAGGGAATGTGGGATTTTAACTGACGATGGTATAGCAATTGAAGGTCCTGAATTCCGGGAGAAGAAGGAGGAAGAATTGAGTGTAATAGTACCGAAACTTCAGGTACATTTACAATAA 2199 46.16 MESYLNENFGDVKPKNSSEEALQRWRRLCWLVKNRKRRFRFTANLSKRFEANAIRRSNQEKFRVAVLVSQAALQFINGLDLSPDYVVPEEVKQAGFEICADEAGSIVDGRDVKKLKIHGGAEGIATKLATSTETGIPTTDHLIKKRRDVYGINKFTESPPRGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAQDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAIQVTRHGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVNSQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFSRKLQEGSYFSWSGDEAREVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICSKVREVGNSSKCSDYRTELPDSAVGILLQSIFNNTGGEIVKNKDGKNETLGTPTESALLEFGLLLGGDFQEERQKSKITRVEPFNSVKKRMGVVLELPAGGFRVHSKGASEIVLASCDKVLDSDGEAVPLNEESINFLKETIEEFAGEALRTLCLAYMDIEGGYNPESPIPACGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKKEEELSVIVPKLQVHLQ 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1857193 1862996 + MELO3C016817.2.1 Cme07g00287 332303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00287 732 Gene3D - 512 658 IPR023299 GO:0000166
Cme07g00287 732 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Cme07g00287 732 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Cme07g00287 732 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Cme07g00287 732 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cme07g00287 732 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Cme07g00287 732 Pfam E1-E2 ATPase 239 432 - -
Cme07g00287 732 Pfam Cation transport ATPase (P-type) 515 594 - -
Cme07g00287 732 Gene3D - 659 730 IPR023214 -
Cme07g00287 732 Gene3D - 215 312 - -
Cme07g00287 732 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 206 377 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g00287 732 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 550 701 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g00287 732 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 387 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme07g00287 732 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 729 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cme07g00287 732 PANTHER CATION TRANSPORTING ATPASE 3 729 - -
Cme07g00287 732 Gene3D - 169 506 - -
Cme07g00287 732 Pfam Cation transporter/ATPase, N-terminus 119 186 IPR004014 -
Cme07g00287 732 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Cme07g00287 732 PRINTS Sodium/potassium-transporting ATPase signature 204 224 - -
Cme07g00287 732 PRINTS Sodium/potassium-transporting ATPase signature 578 596 - -
Cme07g00287 732 PRINTS Sodium/potassium-transporting ATPase signature 447 468 - -
Cme07g00287 732 Gene3D - 17 77 - -
Cme07g00287 732 PANTHER CALCIUM-TRANSPORTING ATPASE 3 729 - -
Cme07g00287 732 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 448 IPR023298 -
Cme07g00287 732 SUPERFAMILY Calcium ATPase, transduction domain A 240 334 IPR008250 -
Cme07g00287 732 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Cme07g00287 732 SUPERFAMILY HAD-like 648 729 IPR036412 -
Cme07g00287 732 SMART Cation_ATPase_N_a_2 120 191 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00287 Cme-Chr7:1857193 Cme09g01069 Cme-Chr9:14953029 0 dispersed
Cme08g00036 Cme-Chr8:294487 Cme07g00287 Cme-Chr7:1857193 2.92E-09 transposed
Cme07g00287 Cme-Chr7:1857193 Cme08g00653 Cme-Chr8:4271327 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00287 K01537 - csv:101221694 1380.16