Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00293 GTGCAGATCAAAAGTAAGAAAGGCACAGAATCAAAAAAAGTGAGCAGCACACGGCGGCGGAAATGTGAAGAAGAACAAGAAAATGGAAGGTCGTCGTGTGATATGAACAGTTGCAGCAGCGATAACTCATCGGAGGATGACAATAATAATAATGCTTCACCAAAACCCAAAACTAGAGCCACTAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGCCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGATATTAGCACAATGCTTGAGGAAGCAGTTCATTATGTTAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGTTGTGGATGTATGCACCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCAATTTTATGA 447 41.16 VQIKSKKGTESKKVSSTRRRKCEEEQENGRSSCDMNSCSSDNSSEDDNNNNASPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSIL 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1901015 1901956 - MELO3C016810.2.1 Cme07g00293 332309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00293 148 CDD bHLH_AtIND_like 65 127 - -
Cme07g00293 148 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 146 - -
Cme07g00293 148 MobiDBLite consensus disorder prediction 1 30 - -
Cme07g00293 148 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 130 IPR036638 GO:0046983
Cme07g00293 148 MobiDBLite consensus disorder prediction 1 75 - -
Cme07g00293 148 Gene3D - 65 122 IPR036638 GO:0046983
Cme07g00293 148 MobiDBLite consensus disorder prediction 31 68 - -
Cme07g00293 148 PANTHER TRANSCRIPTION FACTOR BHLH54 5 146 - -
Cme07g00293 148 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Cme07g00293 148 Pfam Helix-loop-helix DNA-binding domain 74 114 IPR011598 GO:0046983
Cme07g00293 148 SMART finulus 70 119 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00293 Cme-Chr7:1901015 Cme09g00932 Cme-Chr9:13028405 2.57E-28 dispersed
Cme07g00345 Cme-Chr7:2214088 Cme07g00293 Cme-Chr7:1901015 1.29E-21 dispersed
Cme12g01026 Cme-Chr12:17884010 Cme07g00293 Cme-Chr7:1901015 4.87E-09 transposed
Cme01g00118 Cme-Chr1:844087 Cme07g00293 Cme-Chr7:1901015 2.51E-53 wgd
Cme03g02098 Cme-Chr3:28290488 Cme07g00293 Cme-Chr7:1901015 6.72E-34 wgd
Cme07g00293 Cme-Chr7:1901015 Cme07g02178 Cme-Chr7:26146937 6.84E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41608 PF00010 HLH 2.60E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00293 - - cmo:103493599 253.832